Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR6Q1 (olfactory receptor, family 6, subfamily Q, member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 6, subfamily Q, member 1 (gene/pseudogene)
Other aliasOR11-226
HGNC (Hugo) OR6Q1
LocusID (NCBI) 219952
Atlas_Id 71477
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57798425 and ends at 57799378 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6Q1   15302
Cards
Entrez_Gene (NCBI)OR6Q1  219952  olfactory receptor, family 6, subfamily Q, member 1 (gene/pseudogene)
AliasesOR11-226
GeneCards (Weizmann)OR6Q1
Ensembl hg19 (Hinxton)ENSG00000172381 [Gene_View]  chr11:57798425-57799378 [Contig_View]  OR6Q1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172381 [Gene_View]  chr11:57798425-57799378 [Contig_View]  OR6Q1 [Vega]
ICGC DataPortalENSG00000172381
TCGA cBioPortalOR6Q1
AceView (NCBI)OR6Q1
Genatlas (Paris)OR6Q1
WikiGenes219952
SOURCE (Princeton)OR6Q1
Genetics Home Reference (NIH)OR6Q1
Genomic and cartography
GoldenPath hg19 (UCSC)OR6Q1  -     chr11:57798425-57799378 +  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR6Q1  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOR6Q1 - 11q12.1 [CytoView hg19]  OR6Q1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR6Q1 [Mapview hg19]  OR6Q1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC151146 BC151147
RefSeq transcript (Entrez)NM_001005186
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR6Q1
Cluster EST : UnigeneHs.690432 [ NCBI ]
CGAP (NCI)Hs.690432
Alternative Splicing GalleryENSG00000172381
Gene ExpressionOR6Q1 [ NCBI-GEO ]   OR6Q1 [ EBI - ARRAY_EXPRESS ]   OR6Q1 [ SEEK ]   OR6Q1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6Q1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219952
GTEX Portal (Tissue expression)OR6Q1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGQ2
Splice isoforms : SwissVarQ8NGQ2
PhosPhoSitePlusQ8NGQ2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6Q1
DMDM Disease mutations219952
Blocks (Seattle)OR6Q1
SuperfamilyQ8NGQ2
Human Protein AtlasENSG00000172381
Peptide AtlasQ8NGQ2
HPRD15068
IPIIPI00303589   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGQ2
IntAct (EBI)Q8NGQ2
FunCoupENSG00000172381
BioGRIDOR6Q1
STRING (EMBL)OR6Q1
ZODIACOR6Q1
Ontologies - Pathways
QuickGOQ8NGQ2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6Q1
Atlas of Cancer Signalling NetworkOR6Q1
Wikipedia pathwaysOR6Q1
Orthology - Evolution
OrthoDB219952
GeneTree (enSembl)ENSG00000172381
Phylogenetic Trees/Animal Genes : TreeFamOR6Q1
HOVERGENQ8NGQ2
HOGENOMQ8NGQ2
Homologs : HomoloGeneOR6Q1
Homology/Alignments : Family Browser (UCSC)OR6Q1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6Q1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6Q1
dbVarOR6Q1
ClinVarOR6Q1
1000_GenomesOR6Q1 
Exome Variant ServerOR6Q1
ExAC (Exome Aggregation Consortium)OR6Q1 (select the gene name)
Genetic variants : HAPMAP219952
Genomic Variants (DGV)OR6Q1 [DGVbeta]
DECIPHER (Syndromes)11:57798425-57799378  ENSG00000172381
CONAN: Copy Number AnalysisOR6Q1 
Mutations
ICGC Data PortalOR6Q1 
TCGA Data PortalOR6Q1 
Broad Tumor PortalOR6Q1
OASIS PortalOR6Q1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6Q1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6Q1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6Q1
DgiDB (Drug Gene Interaction Database)OR6Q1
DoCM (Curated mutations)OR6Q1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6Q1 (select a term)
intoGenOR6Q1
Cancer3DOR6Q1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6Q1
Genetic Testing Registry OR6Q1
NextProtQ8NGQ2 [Medical]
TSGene219952
GENETestsOR6Q1
Huge Navigator OR6Q1 [HugePedia]
snp3D : Map Gene to Disease219952
BioCentury BCIQOR6Q1
ClinGenOR6Q1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219952
Chemical/Pharm GKB GenePA32602
Clinical trialOR6Q1
Miscellaneous
canSAR (ICR)OR6Q1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6Q1
EVEXOR6Q1
GoPubMedOR6Q1
iHOPOR6Q1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:37:10 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.