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OR6T1 (olfactory receptor family 6 subfamily T member 1)

Identity

Alias (NCBI)OR11-277
HGNC (Hugo) OR6T1
HGNC Previous nameolfactory receptor, family 6, subfamily T, member 1
LocusID (NCBI) 219874
Atlas_Id 71479
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123942867 and ends at 123943838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR6T1   14848
Cards
Entrez_Gene (NCBI)OR6T1    olfactory receptor family 6 subfamily T member 1
AliasesOR11-277
GeneCards (Weizmann)OR6T1
Ensembl hg19 (Hinxton)ENSG00000181499 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181499 [Gene_View]  ENSG00000181499 [Sequence]  chr11:123942867-123943838 [Contig_View]  OR6T1 [Vega]
ICGC DataPortalENSG00000181499
TCGA cBioPortalOR6T1
AceView (NCBI)OR6T1
Genatlas (Paris)OR6T1
SOURCE (Princeton)OR6T1
Genetics Home Reference (NIH)OR6T1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6T1  -     chr11:123942867-123943838 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6T1  -     11q24.1   [Description]    (hg19-Feb_2009)
GoldenPathOR6T1 - 11q24.1 [CytoView hg19]  OR6T1 - 11q24.1 [CytoView hg38]
ImmunoBaseENSG00000181499
genome Data Viewer NCBIOR6T1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC136906
RefSeq transcript (Entrez)NM_001005187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6T1
Alternative Splicing GalleryENSG00000181499
Gene ExpressionOR6T1 [ NCBI-GEO ]   OR6T1 [ EBI - ARRAY_EXPRESS ]   OR6T1 [ SEEK ]   OR6T1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6T1 [ Firebrowse - Broad ]
GenevisibleExpression of OR6T1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219874
GTEX Portal (Tissue expression)OR6T1
Human Protein AtlasENSG00000181499-OR6T1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGN1
Splice isoforms : SwissVarQ8NGN1
PhosPhoSitePlusQ8NGN1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR6T1
Blocks (Seattle)OR6T1
SuperfamilyQ8NGN1
Human Protein Atlas [tissue]ENSG00000181499-OR6T1 [tissue]
Peptide AtlasQ8NGN1
HPRD15069
IPIIPI00169066   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGN1
IntAct (EBI)Q8NGN1
BioGRIDOR6T1
STRING (EMBL)OR6T1
ZODIACOR6T1
Ontologies - Pathways
QuickGOQ8NGN1
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  G protein-coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  chemical synaptic transmission  dendrite  neurotransmitter receptor activity  synapse  detection of chemical stimulus involved in sensory perception of smell  G protein-coupled serotonin receptor signaling pathway  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  G protein-coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  chemical synaptic transmission  dendrite  neurotransmitter receptor activity  synapse  detection of chemical stimulus involved in sensory perception of smell  G protein-coupled serotonin receptor signaling pathway  
NDEx NetworkOR6T1
Atlas of Cancer Signalling NetworkOR6T1
Wikipedia pathwaysOR6T1
Orthology - Evolution
OrthoDB219874
GeneTree (enSembl)ENSG00000181499
Phylogenetic Trees/Animal Genes : TreeFamOR6T1
HOGENOMQ8NGN1
Homologs : HomoloGeneOR6T1
Homology/Alignments : Family Browser (UCSC)OR6T1
Gene fusions - Rearrangements
Fusion : QuiverOR6T1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6T1 [hg38]
dbVarOR6T1
ClinVarOR6T1
MonarchOR6T1
1000_GenomesOR6T1 
Exome Variant ServerOR6T1
GNOMAD BrowserENSG00000181499
Varsome BrowserOR6T1
Genomic Variants (DGV)OR6T1 [DGVbeta]
DECIPHEROR6T1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6T1 
Mutations
ICGC Data PortalOR6T1 
TCGA Data PortalOR6T1 
Broad Tumor PortalOR6T1
OASIS PortalOR6T1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6T1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR6T1
Mutations and Diseases : HGMDOR6T1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6T1
DgiDB (Drug Gene Interaction Database)OR6T1
DoCM (Curated mutations)OR6T1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6T1 (select a term)
intoGenOR6T1
Cancer3DOR6T1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR6T1
MedgenOR6T1
Genetic Testing Registry OR6T1
NextProtQ8NGN1 [Medical]
GENETestsOR6T1
Target ValidationOR6T1
Huge Navigator OR6T1 [HugePedia]
ClinGenOR6T1
Clinical trials, drugs, therapy
MyCancerGenomeOR6T1
Protein Interactions : CTD
Pharm GKB GenePA32605
Clinical trialOR6T1
Miscellaneous
canSAR (ICR)OR6T1 (select the gene name)
HarmonizomeOR6T1
DataMed IndexOR6T1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6T1
EVEXOR6T1
GoPubMedOR6T1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:21:15 CET 2020
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