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OR6V1 (olfactory receptor family 6 subfamily V member 1)

Identity

Alias_namesolfactory receptor, family 6, subfamily V, member 1
Alias_symbol (synonym)GPR138
Other alias
HGNC (Hugo) OR6V1
LocusID (NCBI) 346517
Atlas_Id 71480
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 143052341 and ends at 143053282 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6V1   15090
Cards
Entrez_Gene (NCBI)OR6V1  346517  olfactory receptor family 6 subfamily V member 1
AliasesGPR138
GeneCards (Weizmann)OR6V1
Ensembl hg19 (Hinxton)ENSG00000225781 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225781 [Gene_View]  chr7:143052341-143053282 [Contig_View]  OR6V1 [Vega]
ICGC DataPortalENSG00000225781
TCGA cBioPortalOR6V1
AceView (NCBI)OR6V1
Genatlas (Paris)OR6V1
WikiGenes346517
SOURCE (Princeton)OR6V1
Genetics Home Reference (NIH)OR6V1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6V1  -     chr7:143052341-143053282 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6V1  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblOR6V1 - 7q34 [CytoView hg19]  OR6V1 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIOR6V1 [Mapview hg19]  OR6V1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137044
RefSeq transcript (Entrez)NM_001001667
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_187562
Consensus coding sequences : CCDS (NCBI)OR6V1
Cluster EST : UnigeneHs.554721 [ NCBI ]
CGAP (NCI)Hs.554721
Alternative Splicing GalleryENSG00000225781
Gene ExpressionOR6V1 [ NCBI-GEO ]   OR6V1 [ EBI - ARRAY_EXPRESS ]   OR6V1 [ SEEK ]   OR6V1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6V1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346517
GTEX Portal (Tissue expression)OR6V1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N148   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N148  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N148
Splice isoforms : SwissVarQ8N148
PhosPhoSitePlusQ8N148
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6V1
DMDM Disease mutations346517
Blocks (Seattle)OR6V1
SuperfamilyQ8N148
Human Protein AtlasENSG00000225781
Peptide AtlasQ8N148
HPRD11417
IPIIPI00166080   
Protein Interaction databases
DIP (DOE-UCLA)Q8N148
IntAct (EBI)Q8N148
FunCoupENSG00000225781
BioGRIDOR6V1
STRING (EMBL)OR6V1
ZODIACOR6V1
Ontologies - Pathways
QuickGOQ8N148
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6V1
Atlas of Cancer Signalling NetworkOR6V1
Wikipedia pathwaysOR6V1
Orthology - Evolution
OrthoDB346517
GeneTree (enSembl)ENSG00000225781
Phylogenetic Trees/Animal Genes : TreeFamOR6V1
HOVERGENQ8N148
HOGENOMQ8N148
Homologs : HomoloGeneOR6V1
Homology/Alignments : Family Browser (UCSC)OR6V1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6V1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6V1
dbVarOR6V1
ClinVarOR6V1
1000_GenomesOR6V1 
Exome Variant ServerOR6V1
ExAC (Exome Aggregation Consortium)OR6V1 (select the gene name)
Genetic variants : HAPMAP346517
Genomic Variants (DGV)OR6V1 [DGVbeta]
DECIPHEROR6V1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6V1 
Mutations
ICGC Data PortalOR6V1 
TCGA Data PortalOR6V1 
Broad Tumor PortalOR6V1
OASIS PortalOR6V1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6V1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6V1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6V1
DgiDB (Drug Gene Interaction Database)OR6V1
DoCM (Curated mutations)OR6V1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6V1 (select a term)
intoGenOR6V1
Cancer3DOR6V1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6V1
Genetic Testing Registry OR6V1
NextProtQ8N148 [Medical]
TSGene346517
GENETestsOR6V1
Target ValidationOR6V1
Huge Navigator OR6V1 [HugePedia]
snp3D : Map Gene to Disease346517
BioCentury BCIQOR6V1
ClinGenOR6V1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346517
Chemical/Pharm GKB GenePA32607
Clinical trialOR6V1
Miscellaneous
canSAR (ICR)OR6V1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6V1
EVEXOR6V1
GoPubMedOR6V1
iHOPOR6V1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:33 CEST 2017

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