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OR6X1 (olfactory receptor family 6 subfamily X member 1)

Identity

Alias_namesolfactory receptor, family 6, subfamily X, member 1
Other aliasOR11-270
HGNC (Hugo) OR6X1
LocusID (NCBI) 390260
Atlas_Id 71482
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123753580 and ends at 123754518 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6X1   14737
Cards
Entrez_Gene (NCBI)OR6X1  390260  olfactory receptor family 6 subfamily X member 1
AliasesOR11-270
GeneCards (Weizmann)OR6X1
Ensembl hg19 (Hinxton)ENSG00000221931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221931 [Gene_View]  chr11:123753580-123754518 [Contig_View]  OR6X1 [Vega]
ICGC DataPortalENSG00000221931
TCGA cBioPortalOR6X1
AceView (NCBI)OR6X1
Genatlas (Paris)OR6X1
WikiGenes390260
SOURCE (Princeton)OR6X1
Genetics Home Reference (NIH)OR6X1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6X1  -     chr11:123753580-123754518 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6X1  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblOR6X1 - 11q24.1 [CytoView hg19]  OR6X1 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIOR6X1 [Mapview hg19]  OR6X1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136855 BC136856
RefSeq transcript (Entrez)NM_001005188
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6X1
Cluster EST : UnigeneHs.553759 [ NCBI ]
CGAP (NCI)Hs.553759
Alternative Splicing GalleryENSG00000221931
Gene ExpressionOR6X1 [ NCBI-GEO ]   OR6X1 [ EBI - ARRAY_EXPRESS ]   OR6X1 [ SEEK ]   OR6X1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6X1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390260
GTEX Portal (Tissue expression)OR6X1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH79
Splice isoforms : SwissVarQ8NH79
PhosPhoSitePlusQ8NH79
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6X1
DMDM Disease mutations390260
Blocks (Seattle)OR6X1
SuperfamilyQ8NH79
Human Protein AtlasENSG00000221931
Peptide AtlasQ8NH79
HPRD15070
IPIIPI00176452   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH79
IntAct (EBI)Q8NH79
FunCoupENSG00000221931
BioGRIDOR6X1
STRING (EMBL)OR6X1
ZODIACOR6X1
Ontologies - Pathways
QuickGOQ8NH79
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6X1
Atlas of Cancer Signalling NetworkOR6X1
Wikipedia pathwaysOR6X1
Orthology - Evolution
OrthoDB390260
GeneTree (enSembl)ENSG00000221931
Phylogenetic Trees/Animal Genes : TreeFamOR6X1
HOVERGENQ8NH79
HOGENOMQ8NH79
Homologs : HomoloGeneOR6X1
Homology/Alignments : Family Browser (UCSC)OR6X1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6X1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6X1
dbVarOR6X1
ClinVarOR6X1
1000_GenomesOR6X1 
Exome Variant ServerOR6X1
ExAC (Exome Aggregation Consortium)OR6X1 (select the gene name)
Genetic variants : HAPMAP390260
Genomic Variants (DGV)OR6X1 [DGVbeta]
DECIPHEROR6X1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6X1 
Mutations
ICGC Data PortalOR6X1 
TCGA Data PortalOR6X1 
Broad Tumor PortalOR6X1
OASIS PortalOR6X1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6X1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6X1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6X1
DgiDB (Drug Gene Interaction Database)OR6X1
DoCM (Curated mutations)OR6X1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6X1 (select a term)
intoGenOR6X1
Cancer3DOR6X1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6X1
Genetic Testing Registry OR6X1
NextProtQ8NH79 [Medical]
TSGene390260
GENETestsOR6X1
Target ValidationOR6X1
Huge Navigator OR6X1 [HugePedia]
snp3D : Map Gene to Disease390260
BioCentury BCIQOR6X1
ClinGenOR6X1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390260
Chemical/Pharm GKB GenePA32609
Clinical trialOR6X1
Miscellaneous
canSAR (ICR)OR6X1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6X1
EVEXOR6X1
GoPubMedOR6X1
iHOPOR6X1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:33 CEST 2017

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