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OR6Y1 (olfactory receptor family 6 subfamily Y member 1)

Identity

Alias_namesOR6Y2
olfactory receptor, family 6, subfamily Y, member 1
Other aliasOR1-11
HGNC (Hugo) OR6Y1
LocusID (NCBI) 391112
Atlas_Id 71483
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158547128 and ends at 158548105 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR6Y1   14823
Cards
Entrez_Gene (NCBI)OR6Y1  391112  olfactory receptor family 6 subfamily Y member 1
AliasesOR1-11; OR6Y2
GeneCards (Weizmann)OR6Y1
Ensembl hg19 (Hinxton)ENSG00000197532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197532 [Gene_View]  chr1:158547128-158548105 [Contig_View]  OR6Y1 [Vega]
ICGC DataPortalENSG00000197532
TCGA cBioPortalOR6Y1
AceView (NCBI)OR6Y1
Genatlas (Paris)OR6Y1
WikiGenes391112
SOURCE (Princeton)OR6Y1
Genetics Home Reference (NIH)OR6Y1
Genomic and cartography
GoldenPath hg38 (UCSC)OR6Y1  -     chr1:158547128-158548105 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR6Y1  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblOR6Y1 - 1q23.1 [CytoView hg19]  OR6Y1 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIOR6Y1 [Mapview hg19]  OR6Y1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005189
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR6Y1
Cluster EST : UnigeneHs.553780 [ NCBI ]
CGAP (NCI)Hs.553780
Alternative Splicing GalleryENSG00000197532
Gene ExpressionOR6Y1 [ NCBI-GEO ]   OR6Y1 [ EBI - ARRAY_EXPRESS ]   OR6Y1 [ SEEK ]   OR6Y1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR6Y1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391112
GTEX Portal (Tissue expression)OR6Y1
Human Protein AtlasENSG00000197532-OR6Y1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGX8
Splice isoforms : SwissVarQ8NGX8
PhosPhoSitePlusQ8NGX8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR6Y1
DMDM Disease mutations391112
Blocks (Seattle)OR6Y1
SuperfamilyQ8NGX8
Human Protein Atlas [tissue]ENSG00000197532-OR6Y1 [tissue]
Peptide AtlasQ8NGX8
HPRD15071
IPIIPI00169197   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGX8
IntAct (EBI)Q8NGX8
FunCoupENSG00000197532
BioGRIDOR6Y1
STRING (EMBL)OR6Y1
ZODIACOR6Y1
Ontologies - Pathways
QuickGOQ8NGX8
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR6Y1
Atlas of Cancer Signalling NetworkOR6Y1
Wikipedia pathwaysOR6Y1
Orthology - Evolution
OrthoDB391112
GeneTree (enSembl)ENSG00000197532
Phylogenetic Trees/Animal Genes : TreeFamOR6Y1
HOVERGENQ8NGX8
HOGENOMQ8NGX8
Homologs : HomoloGeneOR6Y1
Homology/Alignments : Family Browser (UCSC)OR6Y1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR6Y1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR6Y1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR6Y1
dbVarOR6Y1
ClinVarOR6Y1
1000_GenomesOR6Y1 
Exome Variant ServerOR6Y1
ExAC (Exome Aggregation Consortium)ENSG00000197532
GNOMAD BrowserENSG00000197532
Genetic variants : HAPMAP391112
Genomic Variants (DGV)OR6Y1 [DGVbeta]
DECIPHEROR6Y1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR6Y1 
Mutations
ICGC Data PortalOR6Y1 
TCGA Data PortalOR6Y1 
Broad Tumor PortalOR6Y1
OASIS PortalOR6Y1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR6Y1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR6Y1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR6Y1
DgiDB (Drug Gene Interaction Database)OR6Y1
DoCM (Curated mutations)OR6Y1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR6Y1 (select a term)
intoGenOR6Y1
Cancer3DOR6Y1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR6Y1
Genetic Testing Registry OR6Y1
NextProtQ8NGX8 [Medical]
TSGene391112
GENETestsOR6Y1
Target ValidationOR6Y1
Huge Navigator OR6Y1 [HugePedia]
snp3D : Map Gene to Disease391112
BioCentury BCIQOR6Y1
ClinGenOR6Y1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391112
Chemical/Pharm GKB GenePA32610
Clinical trialOR6Y1
Miscellaneous
canSAR (ICR)OR6Y1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR6Y1
EVEXOR6Y1
GoPubMedOR6Y1
iHOPOR6Y1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:09 CET 2017

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