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OR7A17 (olfactory receptor family 7 subfamily A member 17)

Identity

Alias_namesolfactory receptor, family 7, subfamily A, member 17
Alias_symbol (synonym)HTPCRX19
Other aliasBC85395_4
HGNC (Hugo) OR7A17
LocusID (NCBI) 26333
Atlas_Id 71485
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14880426 and ends at 14881355 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR7A17   8363
Cards
Entrez_Gene (NCBI)OR7A17  26333  olfactory receptor family 7 subfamily A member 17
AliasesBC85395_4; HTPCRX19
GeneCards (Weizmann)OR7A17
Ensembl hg19 (Hinxton)ENSG00000185385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185385 [Gene_View]  chr19:14880426-14881355 [Contig_View]  OR7A17 [Vega]
ICGC DataPortalENSG00000185385
TCGA cBioPortalOR7A17
AceView (NCBI)OR7A17
Genatlas (Paris)OR7A17
WikiGenes26333
SOURCE (Princeton)OR7A17
Genetics Home Reference (NIH)OR7A17
Genomic and cartography
GoldenPath hg38 (UCSC)OR7A17  -     chr19:14880426-14881355 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR7A17  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblOR7A17 - 19p13.12 [CytoView hg19]  OR7A17 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIOR7A17 [Mapview hg19]  OR7A17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC101587 BC117357 HQ258148 X64993
RefSeq transcript (Entrez)NM_030901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR7A17
Cluster EST : UnigeneHs.247717 [ NCBI ]
CGAP (NCI)Hs.247717
Alternative Splicing GalleryENSG00000185385
Gene ExpressionOR7A17 [ NCBI-GEO ]   OR7A17 [ EBI - ARRAY_EXPRESS ]   OR7A17 [ SEEK ]   OR7A17 [ MEM ]
Gene Expression Viewer (FireBrowse)OR7A17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26333
GTEX Portal (Tissue expression)OR7A17
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14581   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14581  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14581
Splice isoforms : SwissVarO14581
PhosPhoSitePlusO14581
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR7A17
DMDM Disease mutations26333
Blocks (Seattle)OR7A17
SuperfamilyO14581
Human Protein AtlasENSG00000185385
Peptide AtlasO14581
HPRD17781
IPIIPI00022490   
Protein Interaction databases
DIP (DOE-UCLA)O14581
IntAct (EBI)O14581
FunCoupENSG00000185385
BioGRIDOR7A17
STRING (EMBL)OR7A17
ZODIACOR7A17
Ontologies - Pathways
QuickGOO14581
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR7A17
Atlas of Cancer Signalling NetworkOR7A17
Wikipedia pathwaysOR7A17
Orthology - Evolution
OrthoDB26333
GeneTree (enSembl)ENSG00000185385
Phylogenetic Trees/Animal Genes : TreeFamOR7A17
HOVERGENO14581
HOGENOMO14581
Homologs : HomoloGeneOR7A17
Homology/Alignments : Family Browser (UCSC)OR7A17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR7A17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR7A17
dbVarOR7A17
ClinVarOR7A17
1000_GenomesOR7A17 
Exome Variant ServerOR7A17
ExAC (Exome Aggregation Consortium)OR7A17 (select the gene name)
Genetic variants : HAPMAP26333
Genomic Variants (DGV)OR7A17 [DGVbeta]
DECIPHEROR7A17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR7A17 
Mutations
ICGC Data PortalOR7A17 
TCGA Data PortalOR7A17 
Broad Tumor PortalOR7A17
OASIS PortalOR7A17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR7A17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR7A17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR7A17
DgiDB (Drug Gene Interaction Database)OR7A17
DoCM (Curated mutations)OR7A17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR7A17 (select a term)
intoGenOR7A17
Cancer3DOR7A17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR7A17
Genetic Testing Registry OR7A17
NextProtO14581 [Medical]
TSGene26333
GENETestsOR7A17
Target ValidationOR7A17
Huge Navigator OR7A17 [HugePedia]
snp3D : Map Gene to Disease26333
BioCentury BCIQOR7A17
ClinGenOR7A17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26333
Chemical/Pharm GKB GenePA32616
Clinical trialOR7A17
Miscellaneous
canSAR (ICR)OR7A17 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR7A17
EVEXOR7A17
GoPubMedOR7A17
iHOPOR7A17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:57 CEST 2017

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