Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR7C1 (olfactory receptor family 7 subfamily C member 1)

Identity

Alias_namesOR7C4
olfactory receptor, family 7, subfamily C, member 1
Alias_symbol (synonym)OR19-5
Other aliasCIT-HSP-146E8
HSTPCR86P
TPCR86
HGNC (Hugo) OR7C1
LocusID (NCBI) 26664
Atlas_Id 71487
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14799174 and ends at 14800136 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR7C1   8373
Cards
Entrez_Gene (NCBI)OR7C1  26664  olfactory receptor family 7 subfamily C member 1
AliasesCIT-HSP-146E8; HSTPCR86P; OR19-5; OR7C4; 
TPCR86
GeneCards (Weizmann)OR7C1
Ensembl hg19 (Hinxton)ENSG00000127530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127530 [Gene_View]  chr19:14799174-14800136 [Contig_View]  OR7C1 [Vega]
ICGC DataPortalENSG00000127530
TCGA cBioPortalOR7C1
AceView (NCBI)OR7C1
Genatlas (Paris)OR7C1
WikiGenes26664
SOURCE (Princeton)OR7C1
Genetics Home Reference (NIH)OR7C1
Genomic and cartography
GoldenPath hg38 (UCSC)OR7C1  -     chr19:14799174-14800136 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR7C1  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblOR7C1 - 19p13.12 [CytoView hg19]  OR7C1 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIOR7C1 [Mapview hg19]  OR7C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC117212 HQ258391 X89676
RefSeq transcript (Entrez)NM_198944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR7C1
Cluster EST : UnigeneHs.466053 [ NCBI ]
CGAP (NCI)Hs.466053
Alternative Splicing GalleryENSG00000127530
Gene ExpressionOR7C1 [ NCBI-GEO ]   OR7C1 [ EBI - ARRAY_EXPRESS ]   OR7C1 [ SEEK ]   OR7C1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR7C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26664
GTEX Portal (Tissue expression)OR7C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76099   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76099  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76099
Splice isoforms : SwissVarO76099
PhosPhoSitePlusO76099
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR7C1
DMDM Disease mutations26664
Blocks (Seattle)OR7C1
SuperfamilyO76099
Human Protein AtlasENSG00000127530
Peptide AtlasO76099
HPRD17783
IPIIPI00008839   
Protein Interaction databases
DIP (DOE-UCLA)O76099
IntAct (EBI)O76099
FunCoupENSG00000127530
BioGRIDOR7C1
STRING (EMBL)OR7C1
ZODIACOR7C1
Ontologies - Pathways
QuickGOO76099
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  spermatogenesis  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  spermatogenesis  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR7C1
Atlas of Cancer Signalling NetworkOR7C1
Wikipedia pathwaysOR7C1
Orthology - Evolution
OrthoDB26664
GeneTree (enSembl)ENSG00000127530
Phylogenetic Trees/Animal Genes : TreeFamOR7C1
HOVERGENO76099
HOGENOMO76099
Homologs : HomoloGeneOR7C1
Homology/Alignments : Family Browser (UCSC)OR7C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR7C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR7C1
dbVarOR7C1
ClinVarOR7C1
1000_GenomesOR7C1 
Exome Variant ServerOR7C1
ExAC (Exome Aggregation Consortium)OR7C1 (select the gene name)
Genetic variants : HAPMAP26664
Genomic Variants (DGV)OR7C1 [DGVbeta]
DECIPHEROR7C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR7C1 
Mutations
ICGC Data PortalOR7C1 
TCGA Data PortalOR7C1 
Broad Tumor PortalOR7C1
OASIS PortalOR7C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR7C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR7C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR7C1
DgiDB (Drug Gene Interaction Database)OR7C1
DoCM (Curated mutations)OR7C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR7C1 (select a term)
intoGenOR7C1
Cancer3DOR7C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR7C1
Genetic Testing Registry OR7C1
NextProtO76099 [Medical]
TSGene26664
GENETestsOR7C1
Target ValidationOR7C1
Huge Navigator OR7C1 [HugePedia]
snp3D : Map Gene to Disease26664
BioCentury BCIQOR7C1
ClinGenOR7C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26664
Chemical/Pharm GKB GenePA32624
Clinical trialOR7C1
Miscellaneous
canSAR (ICR)OR7C1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR7C1
EVEXOR7C1
GoPubMedOR7C1
iHOPOR7C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:33:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.