Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR7E24 (olfactory receptor family 7 subfamily E member 24)

Identity

Alias_namesOR7E24P
olfactory receptor, family 7, subfamily E, member 24 pseudogene
olfactory receptor, family 7, subfamily E, member 24
Alias_symbol (synonym)OR19-8
HSHT2
OR7E24Q
Other alias
HGNC (Hugo) OR7E24
LocusID (NCBI) 26648
Atlas_Id 71500
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9251044 and ends at 9252063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR7E24   8396
Cards
Entrez_Gene (NCBI)OR7E24  26648  olfactory receptor family 7 subfamily E member 24
AliasesHSHT2; OR19-8; OR7E24P; OR7E24Q
GeneCards (Weizmann)OR7E24
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:9251044-9252063 [Contig_View]  OR7E24 [Vega]
TCGA cBioPortalOR7E24
AceView (NCBI)OR7E24
Genatlas (Paris)OR7E24
WikiGenes26648
SOURCE (Princeton)OR7E24
Genetics Home Reference (NIH)OR7E24
Genomic and cartography
GoldenPath hg38 (UCSC)OR7E24  -     chr19:9251044-9252063 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR7E24  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblOR7E24 - 19p13.2 [CytoView hg19]  OR7E24 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIOR7E24 [Mapview hg19]  OR7E24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146920 BC156695 Y10529
RefSeq transcript (Entrez)NM_001079935
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR7E24
Cluster EST : UnigeneHs.129832 [ NCBI ]
CGAP (NCI)Hs.129832
Gene ExpressionOR7E24 [ NCBI-GEO ]   OR7E24 [ EBI - ARRAY_EXPRESS ]   OR7E24 [ SEEK ]   OR7E24 [ MEM ]
Gene Expression Viewer (FireBrowse)OR7E24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26648
GTEX Portal (Tissue expression)OR7E24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IFN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IFN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IFN5
Splice isoforms : SwissVarQ6IFN5
PhosPhoSitePlusQ6IFN5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR7E24
DMDM Disease mutations26648
Blocks (Seattle)OR7E24
SuperfamilyQ6IFN5
Peptide AtlasQ6IFN5
IPIIPI00465269   
Protein Interaction databases
DIP (DOE-UCLA)Q6IFN5
IntAct (EBI)Q6IFN5
BioGRIDOR7E24
STRING (EMBL)OR7E24
ZODIACOR7E24
Ontologies - Pathways
QuickGOQ6IFN5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR7E24
Atlas of Cancer Signalling NetworkOR7E24
Wikipedia pathwaysOR7E24
Orthology - Evolution
OrthoDB26648
Phylogenetic Trees/Animal Genes : TreeFamOR7E24
HOVERGENQ6IFN5
HOGENOMQ6IFN5
Homologs : HomoloGeneOR7E24
Homology/Alignments : Family Browser (UCSC)OR7E24
Gene fusions - Rearrangements
Fusion: Tumor Portal OR7E24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR7E24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR7E24
dbVarOR7E24
ClinVarOR7E24
1000_GenomesOR7E24 
Exome Variant ServerOR7E24
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP26648
Genomic Variants (DGV)OR7E24 [DGVbeta]
DECIPHEROR7E24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR7E24 
Mutations
ICGC Data PortalOR7E24 
TCGA Data PortalOR7E24 
Broad Tumor PortalOR7E24
OASIS PortalOR7E24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR7E24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR7E24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR7E24
DgiDB (Drug Gene Interaction Database)OR7E24
DoCM (Curated mutations)OR7E24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR7E24 (select a term)
intoGenOR7E24
Cancer3DOR7E24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR7E24
Genetic Testing Registry OR7E24
NextProtQ6IFN5 [Medical]
TSGene26648
GENETestsOR7E24
Target ValidationOR7E24
Huge Navigator OR7E24 [HugePedia]
snp3D : Map Gene to Disease26648
BioCentury BCIQOR7E24
ClinGenOR7E24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26648
Chemical/Pharm GKB GenePA32675
Clinical trialOR7E24
Miscellaneous
canSAR (ICR)OR7E24 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR7E24
EVEXOR7E24
GoPubMedOR7E24
iHOPOR7E24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.