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OR8A1 (olfactory receptor family 8 subfamily A member 1)

Identity

Alias_namesolfactory receptor, family 8, subfamily A, member 1
Alias_symbol (synonym)OST025
Other aliasOR11-318
HGNC (Hugo) OR8A1
LocusID (NCBI) 390275
Atlas_Id 71510
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124570069 and ends at 124571049 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8A1   8469
Cards
Entrez_Gene (NCBI)OR8A1  390275  olfactory receptor family 8 subfamily A member 1
AliasesOR11-318; OST025
GeneCards (Weizmann)OR8A1
Ensembl hg19 (Hinxton)ENSG00000196119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196119 [Gene_View]  chr11:124570069-124571049 [Contig_View]  OR8A1 [Vega]
ICGC DataPortalENSG00000196119
TCGA cBioPortalOR8A1
AceView (NCBI)OR8A1
Genatlas (Paris)OR8A1
WikiGenes390275
SOURCE (Princeton)OR8A1
Genetics Home Reference (NIH)OR8A1
Genomic and cartography
GoldenPath hg38 (UCSC)OR8A1  -     chr11:124570069-124571049 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8A1  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblOR8A1 - 11q24.2 [CytoView hg19]  OR8A1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8A1 [Mapview hg19]  OR8A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY726592 BC137194 BC137197
RefSeq transcript (Entrez)NM_001005194
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8A1
Cluster EST : UnigeneHs.632104 [ NCBI ]
CGAP (NCI)Hs.632104
Alternative Splicing GalleryENSG00000196119
Gene ExpressionOR8A1 [ NCBI-GEO ]   OR8A1 [ EBI - ARRAY_EXPRESS ]   OR8A1 [ SEEK ]   OR8A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390275
GTEX Portal (Tissue expression)OR8A1
Human Protein AtlasENSG00000196119-OR8A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGG7
Splice isoforms : SwissVarQ8NGG7
PhosPhoSitePlusQ8NGG7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8A1
DMDM Disease mutations390275
Blocks (Seattle)OR8A1
SuperfamilyQ8NGG7
Human Protein Atlas [tissue]ENSG00000196119-OR8A1 [tissue]
Peptide AtlasQ8NGG7
HPRD15077
IPIIPI00303418   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGG7
IntAct (EBI)Q8NGG7
FunCoupENSG00000196119
BioGRIDOR8A1
STRING (EMBL)OR8A1
ZODIACOR8A1
Ontologies - Pathways
QuickGOQ8NGG7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8A1
Atlas of Cancer Signalling NetworkOR8A1
Wikipedia pathwaysOR8A1
Orthology - Evolution
OrthoDB390275
GeneTree (enSembl)ENSG00000196119
Phylogenetic Trees/Animal Genes : TreeFamOR8A1
HOVERGENQ8NGG7
HOGENOMQ8NGG7
Homologs : HomoloGeneOR8A1
Homology/Alignments : Family Browser (UCSC)OR8A1
Gene fusions - Rearrangements
Fusion: Tumor Portal OR8A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8A1
dbVarOR8A1
ClinVarOR8A1
1000_GenomesOR8A1 
Exome Variant ServerOR8A1
ExAC (Exome Aggregation Consortium)ENSG00000196119
GNOMAD BrowserENSG00000196119
Genetic variants : HAPMAP390275
Genomic Variants (DGV)OR8A1 [DGVbeta]
DECIPHEROR8A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8A1 
Mutations
ICGC Data PortalOR8A1 
TCGA Data PortalOR8A1 
Broad Tumor PortalOR8A1
OASIS PortalOR8A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8A1
DgiDB (Drug Gene Interaction Database)OR8A1
DoCM (Curated mutations)OR8A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8A1 (select a term)
intoGenOR8A1
Cancer3DOR8A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8A1
Genetic Testing Registry OR8A1
NextProtQ8NGG7 [Medical]
TSGene390275
GENETestsOR8A1
Target ValidationOR8A1
Huge Navigator OR8A1 [HugePedia]
snp3D : Map Gene to Disease390275
BioCentury BCIQOR8A1
ClinGenOR8A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390275
Chemical/Pharm GKB GenePA32744
Clinical trialOR8A1
Miscellaneous
canSAR (ICR)OR8A1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8A1
EVEXOR8A1
GoPubMedOR8A1
iHOPOR8A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:15 CET 2017

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