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OR8B12 (olfactory receptor, family 8, subfamily B, member 12)

Identity

Alias_namesolfactory receptor, family 8, subfamily B, member 12
Other aliasOR11-317
HGNC (Hugo) OR8B12
LocusID (NCBI) 219858
Atlas_Id 71511
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124412618 and ends at 124413550 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8B12   15307
Cards
Entrez_Gene (NCBI)OR8B12  219858  olfactory receptor, family 8, subfamily B, member 12
AliasesOR11-317
GeneCards (Weizmann)OR8B12
Ensembl hg19 (Hinxton)ENSG00000170953 [Gene_View]  chr11:124412618-124413550 [Contig_View]  OR8B12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170953 [Gene_View]  chr11:124412618-124413550 [Contig_View]  OR8B12 [Vega]
ICGC DataPortalENSG00000170953
TCGA cBioPortalOR8B12
AceView (NCBI)OR8B12
Genatlas (Paris)OR8B12
WikiGenes219858
SOURCE (Princeton)OR8B12
Genetics Home Reference (NIH)OR8B12
Genomic and cartography
GoldenPath hg19 (UCSC)OR8B12  -     chr11:124412618-124413550 -  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR8B12  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblOR8B12 - 11q24.2 [CytoView hg19]  OR8B12 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8B12 [Mapview hg19]  OR8B12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136863 BC136864
RefSeq transcript (Entrez)NM_001005195
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)OR8B12
Cluster EST : UnigeneHs.553634 [ NCBI ]
CGAP (NCI)Hs.553634
Alternative Splicing GalleryENSG00000170953
Gene ExpressionOR8B12 [ NCBI-GEO ]   OR8B12 [ EBI - ARRAY_EXPRESS ]   OR8B12 [ SEEK ]   OR8B12 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8B12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219858
GTEX Portal (Tissue expression)OR8B12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGG6
Splice isoforms : SwissVarQ8NGG6
PhosPhoSitePlusQ8NGG6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8B12
DMDM Disease mutations219858
Blocks (Seattle)OR8B12
SuperfamilyQ8NGG6
Human Protein AtlasENSG00000170953
Peptide AtlasQ8NGG6
HPRD17785
IPIIPI00169011   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGG6
IntAct (EBI)Q8NGG6
FunCoupENSG00000170953
BioGRIDOR8B12
STRING (EMBL)OR8B12
ZODIACOR8B12
Ontologies - Pathways
QuickGOQ8NGG6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8B12
Atlas of Cancer Signalling NetworkOR8B12
Wikipedia pathwaysOR8B12
Orthology - Evolution
OrthoDB219858
GeneTree (enSembl)ENSG00000170953
Phylogenetic Trees/Animal Genes : TreeFamOR8B12
HOVERGENQ8NGG6
HOGENOMQ8NGG6
Homologs : HomoloGeneOR8B12
Homology/Alignments : Family Browser (UCSC)OR8B12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8B12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8B12
dbVarOR8B12
ClinVarOR8B12
1000_GenomesOR8B12 
Exome Variant ServerOR8B12
ExAC (Exome Aggregation Consortium)OR8B12 (select the gene name)
Genetic variants : HAPMAP219858
Genomic Variants (DGV)OR8B12 [DGVbeta]
DECIPHER (Syndromes)11:124412618-124413550  ENSG00000170953
CONAN: Copy Number AnalysisOR8B12 
Mutations
ICGC Data PortalOR8B12 
TCGA Data PortalOR8B12 
Broad Tumor PortalOR8B12
OASIS PortalOR8B12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8B12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8B12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8B12
DgiDB (Drug Gene Interaction Database)OR8B12
DoCM (Curated mutations)OR8B12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8B12 (select a term)
intoGenOR8B12
Cancer3DOR8B12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8B12
Genetic Testing Registry OR8B12
NextProtQ8NGG6 [Medical]
TSGene219858
GENETestsOR8B12
Huge Navigator OR8B12 [HugePedia]
snp3D : Map Gene to Disease219858
BioCentury BCIQOR8B12
ClinGenOR8B12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219858
Chemical/Pharm GKB GenePA32748
Clinical trialOR8B12
Miscellaneous
canSAR (ICR)OR8B12 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8B12
EVEXOR8B12
GoPubMedOR8B12
iHOPOR8B12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:18 CET 2017

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