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OR8B2 (olfactory receptor family 8 subfamily B member 2)

Identity

Alias_namesolfactory receptor, family 8, subfamily B, member 2
Other aliasOR11-309
OR11-310
HGNC (Hugo) OR8B2
LocusID (NCBI) 26595
Atlas_Id 71512
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124382402 and ends at 124383343 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8B2   8471
Cards
Entrez_Gene (NCBI)OR8B2  26595  olfactory receptor family 8 subfamily B member 2
AliasesOR11-309; OR11-310
GeneCards (Weizmann)OR8B2
Ensembl hg19 (Hinxton)ENSG00000204293 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204293 [Gene_View]  chr11:124382402-124383343 [Contig_View]  OR8B2 [Vega]
ICGC DataPortalENSG00000204293
TCGA cBioPortalOR8B2
AceView (NCBI)OR8B2
Genatlas (Paris)OR8B2
WikiGenes26595
SOURCE (Princeton)OR8B2
Genetics Home Reference (NIH)OR8B2
Genomic and cartography
GoldenPath hg38 (UCSC)OR8B2  -     chr11:124382402-124383343 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8B2  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblOR8B2 - 11q24.2 [CytoView hg19]  OR8B2 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8B2 [Mapview hg19]  OR8B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8B2
Cluster EST : UnigeneHs.576944 [ NCBI ]
CGAP (NCI)Hs.576944
Alternative Splicing GalleryENSG00000204293
Gene ExpressionOR8B2 [ NCBI-GEO ]   OR8B2 [ EBI - ARRAY_EXPRESS ]   OR8B2 [ SEEK ]   OR8B2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26595
GTEX Portal (Tissue expression)OR8B2
Human Protein AtlasENSG00000204293-OR8B2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RD0
Splice isoforms : SwissVarQ96RD0
PhosPhoSitePlusQ96RD0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8B2
DMDM Disease mutations26595
Blocks (Seattle)OR8B2
SuperfamilyQ96RD0
Human Protein Atlas [tissue]ENSG00000204293-OR8B2 [tissue]
Peptide AtlasQ96RD0
HPRD15078
IPIIPI00382709   IPI00719055   
Protein Interaction databases
DIP (DOE-UCLA)Q96RD0
IntAct (EBI)Q96RD0
FunCoupENSG00000204293
BioGRIDOR8B2
STRING (EMBL)OR8B2
ZODIACOR8B2
Ontologies - Pathways
QuickGOQ96RD0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8B2
Atlas of Cancer Signalling NetworkOR8B2
Wikipedia pathwaysOR8B2
Orthology - Evolution
OrthoDB26595
GeneTree (enSembl)ENSG00000204293
Phylogenetic Trees/Animal Genes : TreeFamOR8B2
HOVERGENQ96RD0
HOGENOMQ96RD0
Homologs : HomoloGeneOR8B2
Homology/Alignments : Family Browser (UCSC)OR8B2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR8B2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8B2
dbVarOR8B2
ClinVarOR8B2
1000_GenomesOR8B2 
Exome Variant ServerOR8B2
ExAC (Exome Aggregation Consortium)ENSG00000204293
GNOMAD BrowserENSG00000204293
Genetic variants : HAPMAP26595
Genomic Variants (DGV)OR8B2 [DGVbeta]
DECIPHEROR8B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8B2 
Mutations
ICGC Data PortalOR8B2 
TCGA Data PortalOR8B2 
Broad Tumor PortalOR8B2
OASIS PortalOR8B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8B2
DgiDB (Drug Gene Interaction Database)OR8B2
DoCM (Curated mutations)OR8B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8B2 (select a term)
intoGenOR8B2
Cancer3DOR8B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8B2
Genetic Testing Registry OR8B2
NextProtQ96RD0 [Medical]
TSGene26595
GENETestsOR8B2
Target ValidationOR8B2
Huge Navigator OR8B2 [HugePedia]
snp3D : Map Gene to Disease26595
BioCentury BCIQOR8B2
ClinGenOR8B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26595
Chemical/Pharm GKB GenePA32750
Clinical trialOR8B2
Miscellaneous
canSAR (ICR)OR8B2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8B2
EVEXOR8B2
GoPubMedOR8B2
iHOPOR8B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:15 CET 2017

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