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OR8B4 (olfactory receptor, family 8, subfamily B, member 4 (gene/pseudogene))

Identity

Alias_namesOR8B4P
olfactory receptor, family 8, subfamily B, member 4 (gene/pseudogene)
Other aliasOR11-315
HGNC (Hugo) OR8B4
LocusID (NCBI) 283162
Atlas_Id 71514
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124293838 and ends at 124294767 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8B4   8473
Cards
Entrez_Gene (NCBI)OR8B4  283162  olfactory receptor, family 8, subfamily B, member 4 (gene/pseudogene)
AliasesOR11-315; OR8B4P
GeneCards (Weizmann)OR8B4
Ensembl hg19 (Hinxton)ENSG00000198657 [Gene_View]  chr11:124293838-124294767 [Contig_View]  OR8B4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198657 [Gene_View]  chr11:124293838-124294767 [Contig_View]  OR8B4 [Vega]
ICGC DataPortalENSG00000198657
TCGA cBioPortalOR8B4
AceView (NCBI)OR8B4
Genatlas (Paris)OR8B4
WikiGenes283162
SOURCE (Princeton)OR8B4
Genetics Home Reference (NIH)OR8B4
Genomic and cartography
GoldenPath hg19 (UCSC)OR8B4  -     chr11:124293838-124294767 -  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR8B4  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblOR8B4 - 11q24.2 [CytoView hg19]  OR8B4 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8B4 [Mapview hg19]  OR8B4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136865 BC136866
RefSeq transcript (Entrez)NM_001005196
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)OR8B4
Cluster EST : UnigeneHs.553671 [ NCBI ]
CGAP (NCI)Hs.553671
Alternative Splicing GalleryENSG00000198657
Gene ExpressionOR8B4 [ NCBI-GEO ]   OR8B4 [ EBI - ARRAY_EXPRESS ]   OR8B4 [ SEEK ]   OR8B4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8B4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283162
GTEX Portal (Tissue expression)OR8B4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RC9
Splice isoforms : SwissVarQ96RC9
PhosPhoSitePlusQ96RC9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8B4
DMDM Disease mutations283162
Blocks (Seattle)OR8B4
SuperfamilyQ96RC9
Human Protein AtlasENSG00000198657
Peptide AtlasQ96RC9
HPRD17786
IPIIPI00050742   
Protein Interaction databases
DIP (DOE-UCLA)Q96RC9
IntAct (EBI)Q96RC9
FunCoupENSG00000198657
BioGRIDOR8B4
STRING (EMBL)OR8B4
ZODIACOR8B4
Ontologies - Pathways
QuickGOQ96RC9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8B4
Atlas of Cancer Signalling NetworkOR8B4
Wikipedia pathwaysOR8B4
Orthology - Evolution
OrthoDB283162
GeneTree (enSembl)ENSG00000198657
Phylogenetic Trees/Animal Genes : TreeFamOR8B4
HOVERGENQ96RC9
HOGENOMQ96RC9
Homologs : HomoloGeneOR8B4
Homology/Alignments : Family Browser (UCSC)OR8B4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8B4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8B4
dbVarOR8B4
ClinVarOR8B4
1000_GenomesOR8B4 
Exome Variant ServerOR8B4
ExAC (Exome Aggregation Consortium)OR8B4 (select the gene name)
Genetic variants : HAPMAP283162
Genomic Variants (DGV)OR8B4 [DGVbeta]
DECIPHER (Syndromes)11:124293838-124294767  ENSG00000198657
CONAN: Copy Number AnalysisOR8B4 
Mutations
ICGC Data PortalOR8B4 
TCGA Data PortalOR8B4 
Broad Tumor PortalOR8B4
OASIS PortalOR8B4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8B4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8B4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8B4
DgiDB (Drug Gene Interaction Database)OR8B4
DoCM (Curated mutations)OR8B4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8B4 (select a term)
intoGenOR8B4
Cancer3DOR8B4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8B4
Genetic Testing Registry OR8B4
NextProtQ96RC9 [Medical]
TSGene283162
GENETestsOR8B4
Huge Navigator OR8B4 [HugePedia]
snp3D : Map Gene to Disease283162
BioCentury BCIQOR8B4
ClinGenOR8B4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283162
Chemical/Pharm GKB GenePA32752
Clinical trialOR8B4
Miscellaneous
canSAR (ICR)OR8B4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8B4
EVEXOR8B4
GoPubMedOR8B4
iHOPOR8B4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:18 CET 2017

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