Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR8B8 (olfactory receptor family 8 subfamily B member 8)

Identity

Alias_namesolfactory receptor, family 8, subfamily B, member 8
Alias_symbol (synonym)TPCR85
Other alias
HGNC (Hugo) OR8B8
LocusID (NCBI) 26493
Atlas_Id 71515
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124440150 and ends at 124441085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8B8   8477
Cards
Entrez_Gene (NCBI)OR8B8  26493  olfactory receptor family 8 subfamily B member 8
AliasesTPCR85
GeneCards (Weizmann)OR8B8
Ensembl hg19 (Hinxton)ENSG00000197125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197125 [Gene_View]  chr11:124440150-124441085 [Contig_View]  OR8B8 [Vega]
ICGC DataPortalENSG00000197125
TCGA cBioPortalOR8B8
AceView (NCBI)OR8B8
Genatlas (Paris)OR8B8
WikiGenes26493
SOURCE (Princeton)OR8B8
Genetics Home Reference (NIH)OR8B8
Genomic and cartography
GoldenPath hg38 (UCSC)OR8B8  -     chr11:124440150-124441085 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8B8  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblOR8B8 - 11q24.2 [CytoView hg19]  OR8B8 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8B8 [Mapview hg19]  OR8B8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF238488 BC130393 BC130419 HQ258145 X89675
RefSeq transcript (Entrez)NM_012378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8B8
Cluster EST : UnigeneHs.351822 [ NCBI ]
CGAP (NCI)Hs.351822
Alternative Splicing GalleryENSG00000197125
Gene ExpressionOR8B8 [ NCBI-GEO ]   OR8B8 [ EBI - ARRAY_EXPRESS ]   OR8B8 [ SEEK ]   OR8B8 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8B8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26493
GTEX Portal (Tissue expression)OR8B8
Human Protein AtlasENSG00000197125-OR8B8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15620   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15620  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15620
Splice isoforms : SwissVarQ15620
PhosPhoSitePlusQ15620
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8B8
DMDM Disease mutations26493
Blocks (Seattle)OR8B8
SuperfamilyQ15620
Human Protein Atlas [tissue]ENSG00000197125-OR8B8 [tissue]
Peptide AtlasQ15620
IPIIPI00018729   
Protein Interaction databases
DIP (DOE-UCLA)Q15620
IntAct (EBI)Q15620
FunCoupENSG00000197125
BioGRIDOR8B8
STRING (EMBL)OR8B8
ZODIACOR8B8
Ontologies - Pathways
QuickGOQ15620
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8B8
Atlas of Cancer Signalling NetworkOR8B8
Wikipedia pathwaysOR8B8
Orthology - Evolution
OrthoDB26493
GeneTree (enSembl)ENSG00000197125
Phylogenetic Trees/Animal Genes : TreeFamOR8B8
HOVERGENQ15620
HOGENOMQ15620
Homologs : HomoloGeneOR8B8
Homology/Alignments : Family Browser (UCSC)OR8B8
Gene fusions - Rearrangements
Fusion: Tumor Portal OR8B8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8B8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8B8
dbVarOR8B8
ClinVarOR8B8
1000_GenomesOR8B8 
Exome Variant ServerOR8B8
ExAC (Exome Aggregation Consortium)ENSG00000197125
GNOMAD BrowserENSG00000197125
Genetic variants : HAPMAP26493
Genomic Variants (DGV)OR8B8 [DGVbeta]
DECIPHEROR8B8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8B8 
Mutations
ICGC Data PortalOR8B8 
TCGA Data PortalOR8B8 
Broad Tumor PortalOR8B8
OASIS PortalOR8B8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8B8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8B8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8B8
DgiDB (Drug Gene Interaction Database)OR8B8
DoCM (Curated mutations)OR8B8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8B8 (select a term)
intoGenOR8B8
Cancer3DOR8B8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8B8
Genetic Testing Registry OR8B8
NextProtQ15620 [Medical]
TSGene26493
GENETestsOR8B8
Target ValidationOR8B8
Huge Navigator OR8B8 [HugePedia]
snp3D : Map Gene to Disease26493
BioCentury BCIQOR8B8
ClinGenOR8B8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26493
Chemical/Pharm GKB GenePA32756
Clinical trialOR8B8
Miscellaneous
canSAR (ICR)OR8B8 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8B8
EVEXOR8B8
GoPubMedOR8B8
iHOPOR8B8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.