Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR8D1 (olfactory receptor, family 8, subfamily D, member 1)

Identity

Alias_namesOR8D3
olfactory receptor, family 8, subfamily D, member 1
Alias_symbol (synonym)OST004
Other aliasJCG9
PDJ9J14
HGNC (Hugo) OR8D1
LocusID (NCBI) 283159
Atlas_Id 71516
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124179736 and ends at 124180662 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8D1   8481
Cards
Entrez_Gene (NCBI)OR8D1  283159  olfactory receptor, family 8, subfamily D, member 1
AliasesJCG9; OR8D3; OST004; PDJ9J14
GeneCards (Weizmann)OR8D1
Ensembl hg19 (Hinxton)ENSG00000196341 [Gene_View]  chr11:124179736-124180662 [Contig_View]  OR8D1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196341 [Gene_View]  chr11:124179736-124180662 [Contig_View]  OR8D1 [Vega]
ICGC DataPortalENSG00000196341
TCGA cBioPortalOR8D1
AceView (NCBI)OR8D1
Genatlas (Paris)OR8D1
WikiGenes283159
SOURCE (Princeton)OR8D1
Genetics Home Reference (NIH)OR8D1
Genomic and cartography
GoldenPath hg19 (UCSC)OR8D1  -     chr11:124179736-124180662 -  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR8D1  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblOR8D1 - 11q24.2 [CytoView hg19]  OR8D1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8D1 [Mapview hg19]  OR8D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF238489 BC136950 BC136954
RefSeq transcript (Entrez)NM_001002917
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)OR8D1
Cluster EST : UnigeneHs.504211 [ NCBI ]
CGAP (NCI)Hs.504211
Alternative Splicing GalleryENSG00000196341
Gene ExpressionOR8D1 [ NCBI-GEO ]   OR8D1 [ EBI - ARRAY_EXPRESS ]   OR8D1 [ SEEK ]   OR8D1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283159
GTEX Portal (Tissue expression)OR8D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ84
Splice isoforms : SwissVarQ8WZ84
PhosPhoSitePlusQ8WZ84
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8D1
DMDM Disease mutations283159
Blocks (Seattle)OR8D1
SuperfamilyQ8WZ84
Human Protein AtlasENSG00000196341
Peptide AtlasQ8WZ84
HPRD17787
IPIIPI00103887   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ84
IntAct (EBI)Q8WZ84
FunCoupENSG00000196341
BioGRIDOR8D1
STRING (EMBL)OR8D1
ZODIACOR8D1
Ontologies - Pathways
QuickGOQ8WZ84
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8D1
Atlas of Cancer Signalling NetworkOR8D1
Wikipedia pathwaysOR8D1
Orthology - Evolution
OrthoDB283159
GeneTree (enSembl)ENSG00000196341
Phylogenetic Trees/Animal Genes : TreeFamOR8D1
HOVERGENQ8WZ84
HOGENOMQ8WZ84
Homologs : HomoloGeneOR8D1
Homology/Alignments : Family Browser (UCSC)OR8D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8D1
dbVarOR8D1
ClinVarOR8D1
1000_GenomesOR8D1 
Exome Variant ServerOR8D1
ExAC (Exome Aggregation Consortium)OR8D1 (select the gene name)
Genetic variants : HAPMAP283159
Genomic Variants (DGV)OR8D1 [DGVbeta]
DECIPHER (Syndromes)11:124179736-124180662  ENSG00000196341
CONAN: Copy Number AnalysisOR8D1 
Mutations
ICGC Data PortalOR8D1 
TCGA Data PortalOR8D1 
Broad Tumor PortalOR8D1
OASIS PortalOR8D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8D1
DgiDB (Drug Gene Interaction Database)OR8D1
DoCM (Curated mutations)OR8D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8D1 (select a term)
intoGenOR8D1
Cancer3DOR8D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8D1
Genetic Testing Registry OR8D1
NextProtQ8WZ84 [Medical]
TSGene283159
GENETestsOR8D1
Huge Navigator OR8D1 [HugePedia]
snp3D : Map Gene to Disease283159
BioCentury BCIQOR8D1
ClinGenOR8D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283159
Chemical/Pharm GKB GenePA32760
Clinical trialOR8D1
Miscellaneous
canSAR (ICR)OR8D1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8D1
EVEXOR8D1
GoPubMedOR8D1
iHOPOR8D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:37:19 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.