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OR8D2 (olfactory receptor, family 8, subfamily D, member 2 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 8, subfamily D, member 2 (gene/pseudogene)
Other aliasJCG2
HGNC (Hugo) OR8D2
LocusID (NCBI) 283160
Atlas_Id 71517
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124189158 and ends at 124190093 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8D2   8482
Cards
Entrez_Gene (NCBI)OR8D2  283160  olfactory receptor, family 8, subfamily D, member 2 (gene/pseudogene)
AliasesJCG2
GeneCards (Weizmann)OR8D2
Ensembl hg19 (Hinxton)ENSG00000197263 [Gene_View]  chr11:124189158-124190093 [Contig_View]  OR8D2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197263 [Gene_View]  chr11:124189158-124190093 [Contig_View]  OR8D2 [Vega]
ICGC DataPortalENSG00000197263
TCGA cBioPortalOR8D2
AceView (NCBI)OR8D2
Genatlas (Paris)OR8D2
WikiGenes283160
SOURCE (Princeton)OR8D2
Genetics Home Reference (NIH)OR8D2
Genomic and cartography
GoldenPath hg19 (UCSC)OR8D2  -     chr11:124189158-124190093 -  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR8D2  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblOR8D2 - 11q24.2 [CytoView hg19]  OR8D2 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8D2 [Mapview hg19]  OR8D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF162668 BC137043 BC137045
RefSeq transcript (Entrez)NM_001002918
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)OR8D2
Cluster EST : UnigeneHs.504212 [ NCBI ]
CGAP (NCI)Hs.504212
Alternative Splicing GalleryENSG00000197263
Gene ExpressionOR8D2 [ NCBI-GEO ]   OR8D2 [ EBI - ARRAY_EXPRESS ]   OR8D2 [ SEEK ]   OR8D2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283160
GTEX Portal (Tissue expression)OR8D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZM6
Splice isoforms : SwissVarQ9GZM6
PhosPhoSitePlusQ9GZM6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8D2
DMDM Disease mutations283160
Blocks (Seattle)OR8D2
SuperfamilyQ9GZM6
Human Protein AtlasENSG00000197263
Peptide AtlasQ9GZM6
HPRD15081
IPIIPI00026323   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZM6
IntAct (EBI)Q9GZM6
FunCoupENSG00000197263
BioGRIDOR8D2
STRING (EMBL)OR8D2
ZODIACOR8D2
Ontologies - Pathways
QuickGOQ9GZM6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8D2
Atlas of Cancer Signalling NetworkOR8D2
Wikipedia pathwaysOR8D2
Orthology - Evolution
OrthoDB283160
GeneTree (enSembl)ENSG00000197263
Phylogenetic Trees/Animal Genes : TreeFamOR8D2
HOVERGENQ9GZM6
HOGENOMQ9GZM6
Homologs : HomoloGeneOR8D2
Homology/Alignments : Family Browser (UCSC)OR8D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8D2
dbVarOR8D2
ClinVarOR8D2
1000_GenomesOR8D2 
Exome Variant ServerOR8D2
ExAC (Exome Aggregation Consortium)OR8D2 (select the gene name)
Genetic variants : HAPMAP283160
Genomic Variants (DGV)OR8D2 [DGVbeta]
DECIPHER (Syndromes)11:124189158-124190093  ENSG00000197263
CONAN: Copy Number AnalysisOR8D2 
Mutations
ICGC Data PortalOR8D2 
TCGA Data PortalOR8D2 
Broad Tumor PortalOR8D2
OASIS PortalOR8D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8D2
DgiDB (Drug Gene Interaction Database)OR8D2
DoCM (Curated mutations)OR8D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8D2 (select a term)
intoGenOR8D2
Cancer3DOR8D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8D2
Genetic Testing Registry OR8D2
NextProtQ9GZM6 [Medical]
TSGene283160
GENETestsOR8D2
Huge Navigator OR8D2 [HugePedia]
snp3D : Map Gene to Disease283160
BioCentury BCIQOR8D2
ClinGenOR8D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283160
Chemical/Pharm GKB GenePA32761
Clinical trialOR8D2
Miscellaneous
canSAR (ICR)OR8D2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8D2
EVEXOR8D2
GoPubMedOR8D2
iHOPOR8D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:19 CET 2017

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