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OR8D4 (olfactory receptor family 8 subfamily D member 4)

Identity

Alias_namesolfactory receptor, family 8, subfamily D, member 4
Other aliasOR11-275
HGNC (Hugo) OR8D4
LocusID (NCBI) 338662
Atlas_Id 71518
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123906432 and ends at 123907376 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8D4   14840
Cards
Entrez_Gene (NCBI)OR8D4  338662  olfactory receptor family 8 subfamily D member 4
AliasesOR11-275
GeneCards (Weizmann)OR8D4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:123906432-123907376 [Contig_View]  OR8D4 [Vega]
TCGA cBioPortalOR8D4
AceView (NCBI)OR8D4
Genatlas (Paris)OR8D4
WikiGenes338662
SOURCE (Princeton)OR8D4
Genetics Home Reference (NIH)OR8D4
Genomic and cartography
GoldenPath hg38 (UCSC)OR8D4  -     chr11:123906432-123907376 +  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8D4  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblOR8D4 - 11q24.1 [CytoView hg19]  OR8D4 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIOR8D4 [Mapview hg19]  OR8D4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137180 BC137206
RefSeq transcript (Entrez)NM_001005197
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8D4
Cluster EST : UnigeneHs.449688 [ NCBI ]
CGAP (NCI)Hs.449688
Gene ExpressionOR8D4 [ NCBI-GEO ]   OR8D4 [ EBI - ARRAY_EXPRESS ]   OR8D4 [ SEEK ]   OR8D4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8D4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338662
GTEX Portal (Tissue expression)OR8D4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGM9
Splice isoforms : SwissVarQ8NGM9
PhosPhoSitePlusQ8NGM9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8D4
DMDM Disease mutations338662
Blocks (Seattle)OR8D4
SuperfamilyQ8NGM9
Peptide AtlasQ8NGM9
HPRD17788
IPIIPI00169064   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGM9
IntAct (EBI)Q8NGM9
BioGRIDOR8D4
STRING (EMBL)OR8D4
ZODIACOR8D4
Ontologies - Pathways
QuickGOQ8NGM9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8D4
Atlas of Cancer Signalling NetworkOR8D4
Wikipedia pathwaysOR8D4
Orthology - Evolution
OrthoDB338662
Phylogenetic Trees/Animal Genes : TreeFamOR8D4
HOVERGENQ8NGM9
HOGENOMQ8NGM9
Homologs : HomoloGeneOR8D4
Homology/Alignments : Family Browser (UCSC)OR8D4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8D4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8D4
dbVarOR8D4
ClinVarOR8D4
1000_GenomesOR8D4 
Exome Variant ServerOR8D4
ExAC (Exome Aggregation Consortium)OR8D4 (select the gene name)
Genetic variants : HAPMAP338662
Genomic Variants (DGV)OR8D4 [DGVbeta]
DECIPHEROR8D4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8D4 
Mutations
ICGC Data PortalOR8D4 
TCGA Data PortalOR8D4 
Broad Tumor PortalOR8D4
OASIS PortalOR8D4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8D4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8D4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8D4
DgiDB (Drug Gene Interaction Database)OR8D4
DoCM (Curated mutations)OR8D4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8D4 (select a term)
intoGenOR8D4
Cancer3DOR8D4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8D4
Genetic Testing Registry OR8D4
NextProtQ8NGM9 [Medical]
TSGene338662
GENETestsOR8D4
Huge Navigator OR8D4 [HugePedia]
snp3D : Map Gene to Disease338662
BioCentury BCIQOR8D4
ClinGenOR8D4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338662
Chemical/Pharm GKB GenePA32762
Clinical trialOR8D4
Miscellaneous
canSAR (ICR)OR8D4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8D4
EVEXOR8D4
GoPubMedOR8D4
iHOPOR8D4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:47:19 CEST 2017

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