Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR8G1 (olfactory receptor family 8 subfamily G member 1 (gene/pseudogene))

Identity

Alias_namesOR8G1P
olfactory receptor, family 8, subfamily G, member 1 pseudogene
olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene)
Alias_symbol (synonym)TPCR25
HSTPCR25
Other alias
HGNC (Hugo) OR8G1
LocusID (NCBI) 26494
Atlas_Id 71519
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124249676 and ends at 124250611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR8G1   8484
Cards
Entrez_Gene (NCBI)OR8G1  26494  olfactory receptor family 8 subfamily G member 1 (gene/pseudogene)
AliasesHSTPCR25; OR8G1P; TPCR25
GeneCards (Weizmann)OR8G1
Ensembl hg19 (Hinxton)ENSG00000197849 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197849 [Gene_View]  ENSG00000197849 [Sequence]  chr11:124249676-124250611 [Contig_View]  OR8G1 [Vega]
ICGC DataPortalENSG00000197849
TCGA cBioPortalOR8G1
AceView (NCBI)OR8G1
Genatlas (Paris)OR8G1
WikiGenes26494
SOURCE (Princeton)OR8G1
Genetics Home Reference (NIH)OR8G1
Genomic and cartography
GoldenPath hg38 (UCSC)OR8G1  -     chr11:124249676-124250611 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8G1  -     11q24.2   [Description]    (hg19-Feb_2009)
OR8G1 - 11q24.2 [CytoView hg19]  OR8G1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIOR8G1 [Mapview hg19]  OR8G1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140352 BC146494 X89672
RefSeq transcript (Entrez)NM_001002905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8G1
Cluster EST : UnigeneHs.448172 [ NCBI ]
CGAP (NCI)Hs.448172
Alternative Splicing GalleryENSG00000197849
Gene ExpressionOR8G1 [ NCBI-GEO ]   OR8G1 [ EBI - ARRAY_EXPRESS ]   OR8G1 [ SEEK ]   OR8G1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8G1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26494
GTEX Portal (Tissue expression)OR8G1
Human Protein AtlasENSG00000197849-OR8G1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15617   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15617  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15617
Splice isoforms : SwissVarQ15617
PhosPhoSitePlusQ15617
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8G1
DMDM Disease mutations26494
Blocks (Seattle)OR8G1
SuperfamilyQ15617
Human Protein Atlas [tissue]ENSG00000197849-OR8G1 [tissue]
Peptide AtlasQ15617
HPRD15082
IPIIPI00099998   
Protein Interaction databases
DIP (DOE-UCLA)Q15617
IntAct (EBI)Q15617
FunCoupENSG00000197849
BioGRIDOR8G1
STRING (EMBL)OR8G1
ZODIACOR8G1
Ontologies - Pathways
QuickGOQ15617
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR8G1
Atlas of Cancer Signalling NetworkOR8G1
Wikipedia pathwaysOR8G1
Orthology - Evolution
OrthoDB26494
GeneTree (enSembl)ENSG00000197849
Phylogenetic Trees/Animal Genes : TreeFamOR8G1
HOGENOMQ15617
Homologs : HomoloGeneOR8G1
Homology/Alignments : Family Browser (UCSC)OR8G1
Gene fusions - Rearrangements
Fusion : QuiverOR8G1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8G1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8G1
dbVarOR8G1
ClinVarOR8G1
1000_GenomesOR8G1 
Exome Variant ServerOR8G1
ExAC (Exome Aggregation Consortium)ENSG00000197849
GNOMAD BrowserENSG00000197849
Varsome BrowserOR8G1
Genetic variants : HAPMAP26494
Genomic Variants (DGV)OR8G1 [DGVbeta]
DECIPHEROR8G1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8G1 
Mutations
ICGC Data PortalOR8G1 
TCGA Data PortalOR8G1 
Broad Tumor PortalOR8G1
OASIS PortalOR8G1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR8G1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8G1
DgiDB (Drug Gene Interaction Database)OR8G1
DoCM (Curated mutations)OR8G1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8G1 (select a term)
intoGenOR8G1
Cancer3DOR8G1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR8G1
MedgenOR8G1
Genetic Testing Registry OR8G1
NextProtQ15617 [Medical]
TSGene26494
GENETestsOR8G1
Target ValidationOR8G1
Huge Navigator OR8G1 [HugePedia]
snp3D : Map Gene to Disease26494
BioCentury BCIQOR8G1
ClinGenOR8G1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26494
Chemical/Pharm GKB GenePA32764
Clinical trialOR8G1
Miscellaneous
canSAR (ICR)OR8G1 (select the gene name)
DataMed IndexOR8G1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8G1
EVEXOR8G1
GoPubMedOR8G1
iHOPOR8G1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 21 15:16:32 CET 2019
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