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OR8J1 (olfactory receptor family 8 subfamily J member 1)

Identity

Alias_namesolfactory receptor, family 8, subfamily J, member 1
Other aliasOR11-183
HGNC (Hugo) OR8J1
LocusID (NCBI) 219477
Atlas_Id 71526
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56360215 and ends at 56361288 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8J1   14855
Cards
Entrez_Gene (NCBI)OR8J1  219477  olfactory receptor family 8 subfamily J member 1
AliasesOR11-183
GeneCards (Weizmann)OR8J1
Ensembl hg19 (Hinxton)ENSG00000172487 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172487 [Gene_View]  chr11:56360215-56361288 [Contig_View]  OR8J1 [Vega]
ICGC DataPortalENSG00000172487
TCGA cBioPortalOR8J1
AceView (NCBI)OR8J1
Genatlas (Paris)OR8J1
WikiGenes219477
SOURCE (Princeton)OR8J1
Genetics Home Reference (NIH)OR8J1
Genomic and cartography
GoldenPath hg38 (UCSC)OR8J1  -     chr11:56360215-56361288 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8J1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR8J1 - 11q12.1 [CytoView hg19]  OR8J1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR8J1 [Mapview hg19]  OR8J1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137066 BC137067
RefSeq transcript (Entrez)NM_001005205
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8J1
Cluster EST : UnigeneHs.626841 [ NCBI ]
CGAP (NCI)Hs.626841
Alternative Splicing GalleryENSG00000172487
Gene ExpressionOR8J1 [ NCBI-GEO ]   OR8J1 [ EBI - ARRAY_EXPRESS ]   OR8J1 [ SEEK ]   OR8J1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8J1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219477
GTEX Portal (Tissue expression)OR8J1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGP2
Splice isoforms : SwissVarQ8NGP2
PhosPhoSitePlusQ8NGP2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8J1
DMDM Disease mutations219477
Blocks (Seattle)OR8J1
SuperfamilyQ8NGP2
Human Protein AtlasENSG00000172487
Peptide AtlasQ8NGP2
HPRD17793
IPIIPI00303579   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGP2
IntAct (EBI)Q8NGP2
FunCoupENSG00000172487
BioGRIDOR8J1
STRING (EMBL)OR8J1
ZODIACOR8J1
Ontologies - Pathways
QuickGOQ8NGP2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8J1
Atlas of Cancer Signalling NetworkOR8J1
Wikipedia pathwaysOR8J1
Orthology - Evolution
OrthoDB219477
GeneTree (enSembl)ENSG00000172487
Phylogenetic Trees/Animal Genes : TreeFamOR8J1
HOVERGENQ8NGP2
HOGENOMQ8NGP2
Homologs : HomoloGeneOR8J1
Homology/Alignments : Family Browser (UCSC)OR8J1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8J1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8J1
dbVarOR8J1
ClinVarOR8J1
1000_GenomesOR8J1 
Exome Variant ServerOR8J1
ExAC (Exome Aggregation Consortium)OR8J1 (select the gene name)
Genetic variants : HAPMAP219477
Genomic Variants (DGV)OR8J1 [DGVbeta]
DECIPHEROR8J1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8J1 
Mutations
ICGC Data PortalOR8J1 
TCGA Data PortalOR8J1 
Broad Tumor PortalOR8J1
OASIS PortalOR8J1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8J1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8J1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8J1
DgiDB (Drug Gene Interaction Database)OR8J1
DoCM (Curated mutations)OR8J1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8J1 (select a term)
intoGenOR8J1
Cancer3DOR8J1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8J1
Genetic Testing Registry OR8J1
NextProtQ8NGP2 [Medical]
TSGene219477
GENETestsOR8J1
Target ValidationOR8J1
Huge Navigator OR8J1 [HugePedia]
snp3D : Map Gene to Disease219477
BioCentury BCIQOR8J1
ClinGenOR8J1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219477
Chemical/Pharm GKB GenePA32772
Clinical trialOR8J1
Miscellaneous
canSAR (ICR)OR8J1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8J1
EVEXOR8J1
GoPubMedOR8J1
iHOPOR8J1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:06 CEST 2017

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