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OR8J3 (olfactory receptor family 8 subfamily J member 3)

Identity

Alias_namesolfactory receptor, family 8, subfamily J, member 3
Other aliasOR11-173
HGNC (Hugo) OR8J3
LocusID (NCBI) 81168
Atlas_Id 71527
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56136771 and ends at 56137718 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8J3   15312
Cards
Entrez_Gene (NCBI)OR8J3  81168  olfactory receptor family 8 subfamily J member 3
AliasesOR11-173
GeneCards (Weizmann)OR8J3
Ensembl hg19 (Hinxton)ENSG00000167822 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167822 [Gene_View]  chr11:56136771-56137718 [Contig_View]  OR8J3 [Vega]
ICGC DataPortalENSG00000167822
TCGA cBioPortalOR8J3
AceView (NCBI)OR8J3
Genatlas (Paris)OR8J3
WikiGenes81168
SOURCE (Princeton)OR8J3
Genetics Home Reference (NIH)OR8J3
Genomic and cartography
GoldenPath hg38 (UCSC)OR8J3  -     chr11:56136771-56137718 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8J3  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR8J3 - 11q12.1 [CytoView hg19]  OR8J3 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR8J3 [Mapview hg19]  OR8J3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8J3
Cluster EST : UnigeneHs.554523 [ NCBI ]
CGAP (NCI)Hs.554523
Alternative Splicing GalleryENSG00000167822
Gene ExpressionOR8J3 [ NCBI-GEO ]   OR8J3 [ EBI - ARRAY_EXPRESS ]   OR8J3 [ SEEK ]   OR8J3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8J3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81168
GTEX Portal (Tissue expression)OR8J3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGG0
Splice isoforms : SwissVarQ8NGG0
PhosPhoSitePlusQ8NGG0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8J3
DMDM Disease mutations81168
Blocks (Seattle)OR8J3
SuperfamilyQ8NGG0
Human Protein AtlasENSG00000167822
Peptide AtlasQ8NGG0
HPRD15085
IPIIPI00169005   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGG0
IntAct (EBI)Q8NGG0
FunCoupENSG00000167822
BioGRIDOR8J3
STRING (EMBL)OR8J3
ZODIACOR8J3
Ontologies - Pathways
QuickGOQ8NGG0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8J3
Atlas of Cancer Signalling NetworkOR8J3
Wikipedia pathwaysOR8J3
Orthology - Evolution
OrthoDB81168
GeneTree (enSembl)ENSG00000167822
Phylogenetic Trees/Animal Genes : TreeFamOR8J3
HOVERGENQ8NGG0
HOGENOMQ8NGG0
Homologs : HomoloGeneOR8J3
Homology/Alignments : Family Browser (UCSC)OR8J3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8J3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8J3
dbVarOR8J3
ClinVarOR8J3
1000_GenomesOR8J3 
Exome Variant ServerOR8J3
ExAC (Exome Aggregation Consortium)OR8J3 (select the gene name)
Genetic variants : HAPMAP81168
Genomic Variants (DGV)OR8J3 [DGVbeta]
DECIPHEROR8J3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8J3 
Mutations
ICGC Data PortalOR8J3 
TCGA Data PortalOR8J3 
Broad Tumor PortalOR8J3
OASIS PortalOR8J3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8J3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8J3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8J3
DgiDB (Drug Gene Interaction Database)OR8J3
DoCM (Curated mutations)OR8J3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8J3 (select a term)
intoGenOR8J3
Cancer3DOR8J3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8J3
Genetic Testing Registry OR8J3
NextProtQ8NGG0 [Medical]
TSGene81168
GENETestsOR8J3
Target ValidationOR8J3
Huge Navigator OR8J3 [HugePedia]
snp3D : Map Gene to Disease81168
BioCentury BCIQOR8J3
ClinGenOR8J3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81168
Chemical/Pharm GKB GenePA32774
Clinical trialOR8J3
Miscellaneous
canSAR (ICR)OR8J3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8J3
EVEXOR8J3
GoPubMedOR8J3
iHOPOR8J3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:40 CEST 2017

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