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OR8K1 (olfactory receptor family 8 subfamily K member 1)

Identity

Alias_namesolfactory receptor, family 8, subfamily K, member 1
Other aliasOR11-182
OR8N1P
HGNC (Hugo) OR8K1
LocusID (NCBI) 390157
Atlas_Id 71528
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56346039 and ends at 56346998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8K1   14831
Cards
Entrez_Gene (NCBI)OR8K1  390157  olfactory receptor family 8 subfamily K member 1
AliasesOR11-182; OR8N1P
GeneCards (Weizmann)OR8K1
Ensembl hg19 (Hinxton)ENSG00000150261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150261 [Gene_View]  chr11:56346039-56346998 [Contig_View]  OR8K1 [Vega]
ICGC DataPortalENSG00000150261
TCGA cBioPortalOR8K1
AceView (NCBI)OR8K1
Genatlas (Paris)OR8K1
WikiGenes390157
SOURCE (Princeton)OR8K1
Genetics Home Reference (NIH)OR8K1
Genomic and cartography
GoldenPath hg38 (UCSC)OR8K1  -     chr11:56346039-56346998 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8K1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR8K1 - 11q12.1 [CytoView hg19]  OR8K1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR8K1 [Mapview hg19]  OR8K1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146844
RefSeq transcript (Entrez)NM_001002907
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8K1
Cluster EST : UnigeneHs.553748 [ NCBI ]
CGAP (NCI)Hs.553748
Alternative Splicing GalleryENSG00000150261
Gene ExpressionOR8K1 [ NCBI-GEO ]   OR8K1 [ EBI - ARRAY_EXPRESS ]   OR8K1 [ SEEK ]   OR8K1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8K1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390157
GTEX Portal (Tissue expression)OR8K1
Human Protein AtlasENSG00000150261-OR8K1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGG5
Splice isoforms : SwissVarQ8NGG5
PhosPhoSitePlusQ8NGG5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8K1
DMDM Disease mutations390157
Blocks (Seattle)OR8K1
SuperfamilyQ8NGG5
Human Protein Atlas [tissue]ENSG00000150261-OR8K1 [tissue]
Peptide AtlasQ8NGG5
HPRD15086
IPIIPI00169010   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGG5
IntAct (EBI)Q8NGG5
FunCoupENSG00000150261
BioGRIDOR8K1
STRING (EMBL)OR8K1
ZODIACOR8K1
Ontologies - Pathways
QuickGOQ8NGG5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8K1
Atlas of Cancer Signalling NetworkOR8K1
Wikipedia pathwaysOR8K1
Orthology - Evolution
OrthoDB390157
GeneTree (enSembl)ENSG00000150261
Phylogenetic Trees/Animal Genes : TreeFamOR8K1
HOVERGENQ8NGG5
HOGENOMQ8NGG5
Homologs : HomoloGeneOR8K1
Homology/Alignments : Family Browser (UCSC)OR8K1
Gene fusions - Rearrangements
Tumor Fusion PortalOR8K1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8K1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8K1
dbVarOR8K1
ClinVarOR8K1
1000_GenomesOR8K1 
Exome Variant ServerOR8K1
ExAC (Exome Aggregation Consortium)ENSG00000150261
GNOMAD BrowserENSG00000150261
Genetic variants : HAPMAP390157
Genomic Variants (DGV)OR8K1 [DGVbeta]
DECIPHEROR8K1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8K1 
Mutations
ICGC Data PortalOR8K1 
TCGA Data PortalOR8K1 
Broad Tumor PortalOR8K1
OASIS PortalOR8K1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8K1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8K1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8K1
DgiDB (Drug Gene Interaction Database)OR8K1
DoCM (Curated mutations)OR8K1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8K1 (select a term)
intoGenOR8K1
Cancer3DOR8K1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR8K1
MedgenOR8K1
Genetic Testing Registry OR8K1
NextProtQ8NGG5 [Medical]
TSGene390157
GENETestsOR8K1
Target ValidationOR8K1
Huge Navigator OR8K1 [HugePedia]
snp3D : Map Gene to Disease390157
BioCentury BCIQOR8K1
ClinGenOR8K1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390157
Chemical/Pharm GKB GenePA32775
Clinical trialOR8K1
Miscellaneous
canSAR (ICR)OR8K1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8K1
EVEXOR8K1
GoPubMedOR8K1
iHOPOR8K1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:55 CET 2017

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