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OR8K3 (olfactory receptor family 8 subfamily K member 3 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 8, subfamily K, member 3 (gene/pseudogene)
Other aliasOR11-181
HGNC (Hugo) OR8K3
LocusID (NCBI) 219473
Atlas_Id 71529
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56318307 and ends at 56319245 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8K3   15313
Cards
Entrez_Gene (NCBI)OR8K3  219473  olfactory receptor family 8 subfamily K member 3 (gene/pseudogene)
AliasesOR11-181
GeneCards (Weizmann)OR8K3
Ensembl hg19 (Hinxton)ENSG00000181689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181689 [Gene_View]  chr11:56318307-56319245 [Contig_View]  OR8K3 [Vega]
ICGC DataPortalENSG00000181689
TCGA cBioPortalOR8K3
AceView (NCBI)OR8K3
Genatlas (Paris)OR8K3
WikiGenes219473
SOURCE (Princeton)OR8K3
Genetics Home Reference (NIH)OR8K3
Genomic and cartography
GoldenPath hg38 (UCSC)OR8K3  -     chr11:56318307-56319245 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8K3  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR8K3 - 11q12.1 [CytoView hg19]  OR8K3 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR8K3 [Mapview hg19]  OR8K3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005202
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8K3
Cluster EST : UnigeneHs.553629 [ NCBI ]
CGAP (NCI)Hs.553629
Alternative Splicing GalleryENSG00000181689
Gene ExpressionOR8K3 [ NCBI-GEO ]   OR8K3 [ EBI - ARRAY_EXPRESS ]   OR8K3 [ SEEK ]   OR8K3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8K3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219473
GTEX Portal (Tissue expression)OR8K3
Human Protein AtlasENSG00000181689-OR8K3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH51
Splice isoforms : SwissVarQ8NH51
PhosPhoSitePlusQ8NH51
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8K3
DMDM Disease mutations219473
Blocks (Seattle)OR8K3
SuperfamilyQ8NH51
Human Protein Atlas [tissue]ENSG00000181689-OR8K3 [tissue]
Peptide AtlasQ8NH51
HPRD17794
IPIIPI00169154   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH51
IntAct (EBI)Q8NH51
FunCoupENSG00000181689
BioGRIDOR8K3
STRING (EMBL)OR8K3
ZODIACOR8K3
Ontologies - Pathways
QuickGOQ8NH51
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8K3
Atlas of Cancer Signalling NetworkOR8K3
Wikipedia pathwaysOR8K3
Orthology - Evolution
OrthoDB219473
GeneTree (enSembl)ENSG00000181689
Phylogenetic Trees/Animal Genes : TreeFamOR8K3
HOVERGENQ8NH51
HOGENOMQ8NH51
Homologs : HomoloGeneOR8K3
Homology/Alignments : Family Browser (UCSC)OR8K3
Gene fusions - Rearrangements
Fusion: Tumor Portal OR8K3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8K3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8K3
dbVarOR8K3
ClinVarOR8K3
1000_GenomesOR8K3 
Exome Variant ServerOR8K3
ExAC (Exome Aggregation Consortium)ENSG00000181689
GNOMAD BrowserENSG00000181689
Genetic variants : HAPMAP219473
Genomic Variants (DGV)OR8K3 [DGVbeta]
DECIPHEROR8K3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8K3 
Mutations
ICGC Data PortalOR8K3 
TCGA Data PortalOR8K3 
Broad Tumor PortalOR8K3
OASIS PortalOR8K3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8K3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8K3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8K3
DgiDB (Drug Gene Interaction Database)OR8K3
DoCM (Curated mutations)OR8K3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8K3 (select a term)
intoGenOR8K3
Cancer3DOR8K3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8K3
Genetic Testing Registry OR8K3
NextProtQ8NH51 [Medical]
TSGene219473
GENETestsOR8K3
Target ValidationOR8K3
Huge Navigator OR8K3 [HugePedia]
snp3D : Map Gene to Disease219473
BioCentury BCIQOR8K3
ClinGenOR8K3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219473
Chemical/Pharm GKB GenePA32777
Clinical trialOR8K3
Miscellaneous
canSAR (ICR)OR8K3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8K3
EVEXOR8K3
GoPubMedOR8K3
iHOPOR8K3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:19 CET 2017

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