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OR8U1 (olfactory receptor family 8 subfamily U member 1)

Identity

Alias_namesolfactory receptor, family 8, subfamily U, member 1
Other alias-
HGNC (Hugo) OR8U1
LocusID (NCBI) 219417
Atlas_Id 71532
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 56375624 and ends at 56376553 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR8U1   19611
Cards
Entrez_Gene (NCBI)OR8U1  219417  olfactory receptor family 8 subfamily U member 1
Aliases
GeneCards (Weizmann)OR8U1
Ensembl hg19 (Hinxton)ENSG00000172199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172199 [Gene_View]  chr11:56375624-56376553 [Contig_View]  OR8U1 [Vega]
ICGC DataPortalENSG00000172199
TCGA cBioPortalOR8U1
AceView (NCBI)OR8U1
Genatlas (Paris)OR8U1
WikiGenes219417
SOURCE (Princeton)OR8U1
Genetics Home Reference (NIH)OR8U1
Genomic and cartography
GoldenPath hg38 (UCSC)OR8U1  -     chr11:56375624-56376553 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR8U1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR8U1 - 11q12.1 [CytoView hg19]  OR8U1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR8U1 [Mapview hg19]  OR8U1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005204
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR8U1
Cluster EST : UnigeneHs.553618 [ NCBI ]
CGAP (NCI)Hs.553618
Alternative Splicing GalleryENSG00000172199
Gene ExpressionOR8U1 [ NCBI-GEO ]   OR8U1 [ EBI - ARRAY_EXPRESS ]   OR8U1 [ SEEK ]   OR8U1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR8U1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219417
GTEX Portal (Tissue expression)OR8U1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH10
Splice isoforms : SwissVarQ8NH10
PhosPhoSitePlusQ8NH10
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR8U1
DMDM Disease mutations219417
Blocks (Seattle)OR8U1
SuperfamilyQ8NH10
Human Protein AtlasENSG00000172199
Peptide AtlasQ8NH10
HPRD17796
IPIIPI00303609   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH10
IntAct (EBI)Q8NH10
FunCoupENSG00000172199
BioGRIDOR8U1
STRING (EMBL)OR8U1
ZODIACOR8U1
Ontologies - Pathways
QuickGOQ8NH10
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR8U1
Atlas of Cancer Signalling NetworkOR8U1
Wikipedia pathwaysOR8U1
Orthology - Evolution
OrthoDB219417
GeneTree (enSembl)ENSG00000172199
Phylogenetic Trees/Animal Genes : TreeFamOR8U1
HOVERGENQ8NH10
HOGENOMQ8NH10
Homologs : HomoloGeneOR8U1
Homology/Alignments : Family Browser (UCSC)OR8U1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR8U1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR8U1
dbVarOR8U1
ClinVarOR8U1
1000_GenomesOR8U1 
Exome Variant ServerOR8U1
ExAC (Exome Aggregation Consortium)OR8U1 (select the gene name)
Genetic variants : HAPMAP219417
Genomic Variants (DGV)OR8U1 [DGVbeta]
DECIPHEROR8U1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR8U1 
Mutations
ICGC Data PortalOR8U1 
TCGA Data PortalOR8U1 
Broad Tumor PortalOR8U1
OASIS PortalOR8U1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR8U1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR8U1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR8U1
DgiDB (Drug Gene Interaction Database)OR8U1
DoCM (Curated mutations)OR8U1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR8U1 (select a term)
intoGenOR8U1
Cancer3DOR8U1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR8U1
Genetic Testing Registry OR8U1
NextProtQ8NH10 [Medical]
TSGene219417
GENETestsOR8U1
Target ValidationOR8U1
Huge Navigator OR8U1 [HugePedia]
snp3D : Map Gene to Disease219417
BioCentury BCIQOR8U1
ClinGenOR8U1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219417
Chemical/Pharm GKB GenePA134970669
Clinical trialOR8U1
Miscellaneous
canSAR (ICR)OR8U1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR8U1
EVEXOR8U1
GoPubMedOR8U1
iHOPOR8U1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:35:08 CEST 2017

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