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OR9A1P (olfactory receptor, family 9, subfamily A, member 1 pseudogene)

Identity

Alias_namesOR9A1
olfactory receptor, family 9, subfamily A, member 1 pseudogene
Alias_symbol (synonym)HTPCRX06
HSHTPCRX06
Other aliasOR9A5P
HGNC (Hugo) OR9A1P
LocusID (NCBI) 26495
Atlas_Id 71534
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 141587322 and ends at 141587664 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OR9A1P   8486
Cards
Entrez_Gene (NCBI)OR9A1P  26495  olfactory receptor, family 9, subfamily A, member 1 pseudogene
AliasesHSHTPCRX06; HTPCRX06; OR9A1; OR9A5P
GeneCards (Weizmann)OR9A1P
Ensembl hg19 (Hinxton) [Gene_View]  chr7:141587322-141587664 [Contig_View]  OR9A1P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:141587322-141587664 [Contig_View]  OR9A1P [Vega]
TCGA cBioPortalOR9A1P
AceView (NCBI)OR9A1P
Genatlas (Paris)OR9A1P
WikiGenes26495
SOURCE (Princeton)OR9A1P
Genetics Home Reference (NIH)OR9A1P
Genomic and cartography
GoldenPath hg19 (UCSC)OR9A1P  -     chr7:141587322-141587664 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR9A1P  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblOR9A1P - 7q34 [CytoView hg19]  OR9A1P - 7q34 [CytoView hg38]
Mapping of homologs : NCBIOR9A1P [Mapview hg19]  OR9A1P [Mapview hg38]
Gene and transcription
Genbank (Entrez)X64982
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_002195 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)OR9A1P
Cluster EST : UnigeneHs.544835 [ NCBI ]
CGAP (NCI)Hs.544835
Gene ExpressionOR9A1P [ NCBI-GEO ]   OR9A1P [ EBI - ARRAY_EXPRESS ]   OR9A1P [ SEEK ]   OR9A1P [ MEM ]
Gene Expression Viewer (FireBrowse)OR9A1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26495
GTEX Portal (Tissue expression)OR9A1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGU1
Splice isoforms : SwissVarQ8NGU1
PhosPhoSitePlusQ8NGU1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR9A1P
DMDM Disease mutations26495
Blocks (Seattle)OR9A1P
SuperfamilyQ8NGU1
Peptide AtlasQ8NGU1
IPIIPI00169137   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGU1
IntAct (EBI)Q8NGU1
BioGRIDOR9A1P
STRING (EMBL)OR9A1P
ZODIACOR9A1P
Ontologies - Pathways
QuickGOQ8NGU1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR9A1P
Atlas of Cancer Signalling NetworkOR9A1P
Wikipedia pathwaysOR9A1P
Orthology - Evolution
OrthoDB26495
Phylogenetic Trees/Animal Genes : TreeFamOR9A1P
HOVERGENQ8NGU1
HOGENOMQ8NGU1
Homologs : HomoloGeneOR9A1P
Homology/Alignments : Family Browser (UCSC)OR9A1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR9A1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR9A1P
dbVarOR9A1P
ClinVarOR9A1P
1000_GenomesOR9A1P 
Exome Variant ServerOR9A1P
ExAC (Exome Aggregation Consortium)OR9A1P (select the gene name)
Genetic variants : HAPMAP26495
Genomic Variants (DGV)OR9A1P [DGVbeta]
DECIPHER (Syndromes)7:141587322-141587664  
CONAN: Copy Number AnalysisOR9A1P 
Mutations
ICGC Data PortalOR9A1P 
TCGA Data PortalOR9A1P 
Broad Tumor PortalOR9A1P
OASIS PortalOR9A1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR9A1P
BioMutasearch OR9A1P
DgiDB (Drug Gene Interaction Database)OR9A1P
DoCM (Curated mutations)OR9A1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR9A1P (select a term)
intoGenOR9A1P
Cancer3DOR9A1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR9A1P
Genetic Testing Registry OR9A1P
NextProtQ8NGU1 [Medical]
TSGene26495
GENETestsOR9A1P
Huge Navigator OR9A1P [HugePedia]
snp3D : Map Gene to Disease26495
BioCentury BCIQOR9A1P
ClinGenOR9A1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26495
Chemical/Pharm GKB GenePA32784
Clinical trialOR9A1P
Miscellaneous
canSAR (ICR)OR9A1P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR9A1P
EVEXOR9A1P
GoPubMedOR9A1P
iHOPOR9A1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:23 CET 2017

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