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OR9A2 (olfactory receptor family 9 subfamily A member 2)

Identity

Alias_namesolfactory receptor, family 9, subfamily A, member 2
Other alias-
HGNC (Hugo) OR9A2
LocusID (NCBI) 135924
Atlas_Id 71535
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 143026200 and ends at 143027132 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR9A2   15093
Cards
Entrez_Gene (NCBI)OR9A2  135924  olfactory receptor family 9 subfamily A member 2
Aliases
GeneCards (Weizmann)OR9A2
Ensembl hg19 (Hinxton)ENSG00000179468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179468 [Gene_View]  chr7:143026200-143027132 [Contig_View]  OR9A2 [Vega]
ICGC DataPortalENSG00000179468
TCGA cBioPortalOR9A2
AceView (NCBI)OR9A2
Genatlas (Paris)OR9A2
WikiGenes135924
SOURCE (Princeton)OR9A2
Genetics Home Reference (NIH)OR9A2
Genomic and cartography
GoldenPath hg38 (UCSC)OR9A2  -     chr7:143026200-143027132 -  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR9A2  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblOR9A2 - 7q34 [CytoView hg19]  OR9A2 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIOR9A2 [Mapview hg19]  OR9A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137048 BC137049
RefSeq transcript (Entrez)NM_001001658
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_187562
Consensus coding sequences : CCDS (NCBI)OR9A2
Cluster EST : UnigeneHs.553594 [ NCBI ]
CGAP (NCI)Hs.553594
Alternative Splicing GalleryENSG00000179468
Gene ExpressionOR9A2 [ NCBI-GEO ]   OR9A2 [ EBI - ARRAY_EXPRESS ]   OR9A2 [ SEEK ]   OR9A2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR9A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135924
GTEX Portal (Tissue expression)OR9A2
Human Protein AtlasENSG00000179468-OR9A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGT5
Splice isoforms : SwissVarQ8NGT5
PhosPhoSitePlusQ8NGT5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR9A2
DMDM Disease mutations135924
Blocks (Seattle)OR9A2
SuperfamilyQ8NGT5
Human Protein Atlas [tissue]ENSG00000179468-OR9A2 [tissue]
Peptide AtlasQ8NGT5
HPRD15088
IPIIPI00168990   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGT5
IntAct (EBI)Q8NGT5
FunCoupENSG00000179468
BioGRIDOR9A2
STRING (EMBL)OR9A2
ZODIACOR9A2
Ontologies - Pathways
QuickGOQ8NGT5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR9A2
Atlas of Cancer Signalling NetworkOR9A2
Wikipedia pathwaysOR9A2
Orthology - Evolution
OrthoDB135924
GeneTree (enSembl)ENSG00000179468
Phylogenetic Trees/Animal Genes : TreeFamOR9A2
HOVERGENQ8NGT5
HOGENOMQ8NGT5
Homologs : HomoloGeneOR9A2
Homology/Alignments : Family Browser (UCSC)OR9A2
Gene fusions - Rearrangements
Tumor Fusion PortalOR9A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR9A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR9A2
dbVarOR9A2
ClinVarOR9A2
1000_GenomesOR9A2 
Exome Variant ServerOR9A2
ExAC (Exome Aggregation Consortium)ENSG00000179468
GNOMAD BrowserENSG00000179468
Genetic variants : HAPMAP135924
Genomic Variants (DGV)OR9A2 [DGVbeta]
DECIPHEROR9A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR9A2 
Mutations
ICGC Data PortalOR9A2 
TCGA Data PortalOR9A2 
Broad Tumor PortalOR9A2
OASIS PortalOR9A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR9A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR9A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR9A2
DgiDB (Drug Gene Interaction Database)OR9A2
DoCM (Curated mutations)OR9A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR9A2 (select a term)
intoGenOR9A2
Cancer3DOR9A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR9A2
MedgenOR9A2
Genetic Testing Registry OR9A2
NextProtQ8NGT5 [Medical]
TSGene135924
GENETestsOR9A2
Target ValidationOR9A2
Huge Navigator OR9A2 [HugePedia]
snp3D : Map Gene to Disease135924
BioCentury BCIQOR9A2
ClinGenOR9A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135924
Chemical/Pharm GKB GenePA32785
Clinical trialOR9A2
Miscellaneous
canSAR (ICR)OR9A2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR9A2
EVEXOR9A2
GoPubMedOR9A2
iHOPOR9A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:55 CET 2017

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