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OR9A4 (olfactory receptor family 9 subfamily A member 4)

Identity

Alias_namesolfactory receptor, family 9, subfamily A, member 4
Other alias-
HGNC (Hugo) OR9A4
LocusID (NCBI) 130075
Atlas_Id 71536
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 141918876 and ends at 141919820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR9A4   15095
Cards
Entrez_Gene (NCBI)OR9A4  130075  olfactory receptor family 9 subfamily A member 4
Aliases
GeneCards (Weizmann)OR9A4
Ensembl hg19 (Hinxton)ENSG00000258083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258083 [Gene_View]  chr7:141918876-141919820 [Contig_View]  OR9A4 [Vega]
ICGC DataPortalENSG00000258083
TCGA cBioPortalOR9A4
AceView (NCBI)OR9A4
Genatlas (Paris)OR9A4
WikiGenes130075
SOURCE (Princeton)OR9A4
Genetics Home Reference (NIH)OR9A4
Genomic and cartography
GoldenPath hg38 (UCSC)OR9A4  -     chr7:141918876-141919820 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR9A4  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblOR9A4 - 7q34 [CytoView hg19]  OR9A4 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIOR9A4 [Mapview hg19]  OR9A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136819 BC136821
RefSeq transcript (Entrez)NM_001001656
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR9A4
Cluster EST : UnigeneHs.690171 [ NCBI ]
CGAP (NCI)Hs.690171
Alternative Splicing GalleryENSG00000258083
Gene ExpressionOR9A4 [ NCBI-GEO ]   OR9A4 [ EBI - ARRAY_EXPRESS ]   OR9A4 [ SEEK ]   OR9A4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR9A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130075
GTEX Portal (Tissue expression)OR9A4
Human Protein AtlasENSG00000258083-OR9A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGU2
Splice isoforms : SwissVarQ8NGU2
PhosPhoSitePlusQ8NGU2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR9A4
DMDM Disease mutations130075
Blocks (Seattle)OR9A4
SuperfamilyQ8NGU2
Human Protein Atlas [tissue]ENSG00000258083-OR9A4 [tissue]
Peptide AtlasQ8NGU2
HPRD17797
IPIIPI00169139   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGU2
IntAct (EBI)Q8NGU2
FunCoupENSG00000258083
BioGRIDOR9A4
STRING (EMBL)OR9A4
ZODIACOR9A4
Ontologies - Pathways
QuickGOQ8NGU2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR9A4
Atlas of Cancer Signalling NetworkOR9A4
Wikipedia pathwaysOR9A4
Orthology - Evolution
OrthoDB130075
GeneTree (enSembl)ENSG00000258083
Phylogenetic Trees/Animal Genes : TreeFamOR9A4
HOVERGENQ8NGU2
HOGENOMQ8NGU2
Homologs : HomoloGeneOR9A4
Homology/Alignments : Family Browser (UCSC)OR9A4
Gene fusions - Rearrangements
Fusion: Tumor Portal OR9A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR9A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR9A4
dbVarOR9A4
ClinVarOR9A4
1000_GenomesOR9A4 
Exome Variant ServerOR9A4
ExAC (Exome Aggregation Consortium)ENSG00000258083
GNOMAD BrowserENSG00000258083
Genetic variants : HAPMAP130075
Genomic Variants (DGV)OR9A4 [DGVbeta]
DECIPHEROR9A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR9A4 
Mutations
ICGC Data PortalOR9A4 
TCGA Data PortalOR9A4 
Broad Tumor PortalOR9A4
OASIS PortalOR9A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR9A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR9A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR9A4
DgiDB (Drug Gene Interaction Database)OR9A4
DoCM (Curated mutations)OR9A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR9A4 (select a term)
intoGenOR9A4
Cancer3DOR9A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR9A4
Genetic Testing Registry OR9A4
NextProtQ8NGU2 [Medical]
TSGene130075
GENETestsOR9A4
Target ValidationOR9A4
Huge Navigator OR9A4 [HugePedia]
snp3D : Map Gene to Disease130075
BioCentury BCIQOR9A4
ClinGenOR9A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130075
Chemical/Pharm GKB GenePA32787
Clinical trialOR9A4
Miscellaneous
canSAR (ICR)OR9A4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR9A4
EVEXOR9A4
GoPubMedOR9A4
iHOPOR9A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:21 CET 2017

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