Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR9I1 (olfactory receptor family 9 subfamily I member 1)

Identity

Alias_namesolfactory receptor, family 9, subfamily I, member 1
Other aliasOR11-228
HGNC (Hugo) OR9I1
LocusID (NCBI) 219954
Atlas_Id 71541
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58118500 and ends at 58119444 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR9I1   14718
Cards
Entrez_Gene (NCBI)OR9I1  219954  olfactory receptor family 9 subfamily I member 1
AliasesOR11-228
GeneCards (Weizmann)OR9I1
Ensembl hg19 (Hinxton)ENSG00000172377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172377 [Gene_View]  chr11:58118500-58119444 [Contig_View]  OR9I1 [Vega]
ICGC DataPortalENSG00000172377
TCGA cBioPortalOR9I1
AceView (NCBI)OR9I1
Genatlas (Paris)OR9I1
WikiGenes219954
SOURCE (Princeton)OR9I1
Genetics Home Reference (NIH)OR9I1
Genomic and cartography
GoldenPath hg38 (UCSC)OR9I1  -     chr11:58118500-58119444 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR9I1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR9I1 - 11q12.1 [CytoView hg19]  OR9I1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR9I1 [Mapview hg19]  OR9I1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR9I1
Cluster EST : UnigeneHs.632122 [ NCBI ]
CGAP (NCI)Hs.632122
Alternative Splicing GalleryENSG00000172377
Gene ExpressionOR9I1 [ NCBI-GEO ]   OR9I1 [ EBI - ARRAY_EXPRESS ]   OR9I1 [ SEEK ]   OR9I1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR9I1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219954
GTEX Portal (Tissue expression)OR9I1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGQ6
Splice isoforms : SwissVarQ8NGQ6
PhosPhoSitePlusQ8NGQ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR9I1
DMDM Disease mutations219954
Blocks (Seattle)OR9I1
SuperfamilyQ8NGQ6
Human Protein AtlasENSG00000172377
Peptide AtlasQ8NGQ6
HPRD17799
IPIIPI00169088   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGQ6
IntAct (EBI)Q8NGQ6
FunCoupENSG00000172377
BioGRIDOR9I1
STRING (EMBL)OR9I1
ZODIACOR9I1
Ontologies - Pathways
QuickGOQ8NGQ6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR9I1
Atlas of Cancer Signalling NetworkOR9I1
Wikipedia pathwaysOR9I1
Orthology - Evolution
OrthoDB219954
GeneTree (enSembl)ENSG00000172377
Phylogenetic Trees/Animal Genes : TreeFamOR9I1
HOVERGENQ8NGQ6
HOGENOMQ8NGQ6
Homologs : HomoloGeneOR9I1
Homology/Alignments : Family Browser (UCSC)OR9I1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR9I1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR9I1
dbVarOR9I1
ClinVarOR9I1
1000_GenomesOR9I1 
Exome Variant ServerOR9I1
ExAC (Exome Aggregation Consortium)OR9I1 (select the gene name)
Genetic variants : HAPMAP219954
Genomic Variants (DGV)OR9I1 [DGVbeta]
DECIPHEROR9I1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR9I1 
Mutations
ICGC Data PortalOR9I1 
TCGA Data PortalOR9I1 
Broad Tumor PortalOR9I1
OASIS PortalOR9I1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR9I1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR9I1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR9I1
DgiDB (Drug Gene Interaction Database)OR9I1
DoCM (Curated mutations)OR9I1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR9I1 (select a term)
intoGenOR9I1
Cancer3DOR9I1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR9I1
Genetic Testing Registry OR9I1
NextProtQ8NGQ6 [Medical]
TSGene219954
GENETestsOR9I1
Target ValidationOR9I1
Huge Navigator OR9I1 [HugePedia]
snp3D : Map Gene to Disease219954
BioCentury BCIQOR9I1
ClinGenOR9I1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219954
Chemical/Pharm GKB GenePA32794
Clinical trialOR9I1
Miscellaneous
canSAR (ICR)OR9I1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR9I1
EVEXOR9I1
GoPubMedOR9I1
iHOPOR9I1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:33:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.