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OR9Q1 (olfactory receptor family 9 subfamily Q member 1)

Identity

Alias_namesolfactory receptor
Other alias-
HGNC (Hugo) OR9Q1
LocusID (NCBI) 219956
Atlas_Id 54518
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58023881 and ends at 58181566 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OR9Q1 (11q12.1) / OR4C46 (11p11.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Lung: Translocations in Squamous Cell Carcinoma
t(11;11)(p11;q12) OR9Q1/OR4C46

External links

Nomenclature
HGNC (Hugo)OR9Q1   14724
Cards
Entrez_Gene (NCBI)OR9Q1  219956  olfactory receptor family 9 subfamily Q member 1
Aliases
GeneCards (Weizmann)OR9Q1
Ensembl hg19 (Hinxton)ENSG00000186509 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186509 [Gene_View]  ENSG00000186509 [Sequence]  chr11:58023881-58181566 [Contig_View]  OR9Q1 [Vega]
ICGC DataPortalENSG00000186509
TCGA cBioPortalOR9Q1
AceView (NCBI)OR9Q1
Genatlas (Paris)OR9Q1
WikiGenes219956
SOURCE (Princeton)OR9Q1
Genetics Home Reference (NIH)OR9Q1
Genomic and cartography
GoldenPath hg38 (UCSC)OR9Q1  -     chr11:58023881-58181566 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR9Q1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR9Q1 - 11q12.1 [CytoView hg19]  OR9Q1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR9Q1 [Mapview hg19]  OR9Q1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC110819
RefSeq transcript (Entrez)NM_001005212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR9Q1
Cluster EST : UnigeneHs.689841 [ NCBI ]
CGAP (NCI)Hs.689841
Alternative Splicing GalleryENSG00000186509
Gene ExpressionOR9Q1 [ NCBI-GEO ]   OR9Q1 [ EBI - ARRAY_EXPRESS ]   OR9Q1 [ SEEK ]   OR9Q1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR9Q1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219956
GTEX Portal (Tissue expression)OR9Q1
Human Protein AtlasENSG00000186509-OR9Q1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGQ5
Splice isoforms : SwissVarQ8NGQ5
PhosPhoSitePlusQ8NGQ5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR9Q1
DMDM Disease mutations219956
Blocks (Seattle)OR9Q1
SuperfamilyQ8NGQ5
Human Protein Atlas [tissue]ENSG00000186509-OR9Q1 [tissue]
Peptide AtlasQ8NGQ5
HPRD17800
IPIIPI00303594   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGQ5
IntAct (EBI)Q8NGQ5
FunCoupENSG00000186509
BioGRIDOR9Q1
STRING (EMBL)OR9Q1
ZODIACOR9Q1
Ontologies - Pathways
QuickGOQ8NGQ5
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  odorant binding  plasma membrane  G protein-coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR9Q1
Atlas of Cancer Signalling NetworkOR9Q1
Wikipedia pathwaysOR9Q1
Orthology - Evolution
OrthoDB219956
GeneTree (enSembl)ENSG00000186509
Phylogenetic Trees/Animal Genes : TreeFamOR9Q1
HOGENOMQ8NGQ5
Homologs : HomoloGeneOR9Q1
Homology/Alignments : Family Browser (UCSC)OR9Q1
Gene fusions - Rearrangements
Fusion : MitelmanOR9Q1/OR4C46 [11q12.1/11p11.12]  
Fusion : QuiverOR9Q1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR9Q1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR9Q1
dbVarOR9Q1
ClinVarOR9Q1
1000_GenomesOR9Q1 
Exome Variant ServerOR9Q1
ExAC (Exome Aggregation Consortium)ENSG00000186509
GNOMAD BrowserENSG00000186509
Varsome BrowserOR9Q1
Genetic variants : HAPMAP219956
Genomic Variants (DGV)OR9Q1 [DGVbeta]
DECIPHEROR9Q1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR9Q1 
Mutations
ICGC Data PortalOR9Q1 
TCGA Data PortalOR9Q1 
Broad Tumor PortalOR9Q1
OASIS PortalOR9Q1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR9Q1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR9Q1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR9Q1
DgiDB (Drug Gene Interaction Database)OR9Q1
DoCM (Curated mutations)OR9Q1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR9Q1 (select a term)
intoGenOR9Q1
Cancer3DOR9Q1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR9Q1
MedgenOR9Q1
Genetic Testing Registry OR9Q1
NextProtQ8NGQ5 [Medical]
TSGene219956
GENETestsOR9Q1
Target ValidationOR9Q1
Huge Navigator OR9Q1 [HugePedia]
snp3D : Map Gene to Disease219956
BioCentury BCIQOR9Q1
ClinGenOR9Q1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219956
Chemical/Pharm GKB GenePA32805
Clinical trialOR9Q1
Miscellaneous
canSAR (ICR)OR9Q1 (select the gene name)
DataMed IndexOR9Q1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR9Q1
EVEXOR9Q1
GoPubMedOR9Q1
iHOPOR9Q1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:29:06 CET 2019
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