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ORM1 (orosomucoid 1)

Identity

Other namesAGP-A
AGP1
HEL-S-153w
ORM
HGNC (Hugo) ORM1
LocusID (NCBI) 5004
Atlas_Id 45955
Location 9q32
Location_base_pair Starts at 117085303 and ends at 117088759 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ORM1 (9q32) / ORM1 (9q32)ORM1 (9q32) / TIMP2 (17q25.3)RIC8A (11p15.5) / ORM1 (9q32)
SMARCB1 (22q11.23) / ORM1 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ORM1   8498
Cards
Entrez_Gene (NCBI)ORM1  5004  orosomucoid 1
AliasesAGP-A; AGP1; HEL-S-153w; ORM
GeneCards (Weizmann)ORM1
Ensembl hg19 (Hinxton)ENSG00000229314 [Gene_View]  chr9:117085303-117088759 [Contig_View]  ORM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229314 [Gene_View]  chr9:117085303-117088759 [Contig_View]  ORM1 [Vega]
ICGC DataPortalENSG00000229314
TCGA cBioPortalORM1
AceView (NCBI)ORM1
Genatlas (Paris)ORM1
WikiGenes5004
SOURCE (Princeton)ORM1
Genomic and cartography
GoldenPath hg19 (UCSC)ORM1  -     chr9:117085303-117088759 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ORM1  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblORM1 - 9q32 [CytoView hg19]  ORM1 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIORM1 [Mapview hg19]  ORM1 [Mapview hg38]
OMIM138600   
Gene and transcription
Genbank (Entrez)AK312035 AK316207 BC007032 BC026238 BC104818
RefSeq transcript (Entrez)NM_000607
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_012108 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ORM1
Cluster EST : UnigeneHs.522356 [ NCBI ]
CGAP (NCI)Hs.522356
Alternative Splicing GalleryENSG00000229314
Gene ExpressionORM1 [ NCBI-GEO ]   ORM1 [ EBI - ARRAY_EXPRESS ]   ORM1 [ SEEK ]   ORM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ORM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5004
GTEX Portal (Tissue expression)ORM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02763 (Uniprot)
NextProtP02763  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02763
Splice isoforms : SwissVarP02763 (Swissvar)
PhosPhoSitePlusP02763
Domains : Interpro (EBI)A1A_glycop    Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
DMDM Disease mutations5004
Blocks (Seattle)ORM1
PDB (SRS)3KQ0   
PDB (PDBSum)3KQ0   
PDB (IMB)3KQ0   
PDB (RSDB)3KQ0   
Structural Biology KnowledgeBase3KQ0   
SCOP (Structural Classification of Proteins)3KQ0   
CATH (Classification of proteins structures)3KQ0   
SuperfamilyP02763
Human Protein AtlasENSG00000229314
Peptide AtlasP02763
HPRD00724
IPIIPI00022429   IPI01015123   
Protein Interaction databases
DIP (DOE-UCLA)P02763
IntAct (EBI)P02763
FunCoupENSG00000229314
BioGRIDORM1
STRING (EMBL)ORM1
ZODIACORM1
Ontologies - Pathways
QuickGOP02763
Ontology : AmiGOplatelet degranulation  regulation of immune system process  protein binding  extracellular region  extracellular region  extracellular space  acute-phase response  inflammatory response  platelet alpha granule lumen  negative regulation of interleukin-6 production  negative regulation of tumor necrosis factor production  extracellular exosome  blood microparticle  
Ontology : EGO-EBIplatelet degranulation  regulation of immune system process  protein binding  extracellular region  extracellular region  extracellular space  acute-phase response  inflammatory response  platelet alpha granule lumen  negative regulation of interleukin-6 production  negative regulation of tumor necrosis factor production  extracellular exosome  blood microparticle  
NDEx Network
Atlas of Cancer Signalling NetworkORM1
Wikipedia pathwaysORM1
Orthology - Evolution
OrthoDB5004
GeneTree (enSembl)ENSG00000229314
Phylogenetic Trees/Animal Genes : TreeFamORM1
Homologs : HomoloGeneORM1
Homology/Alignments : Family Browser (UCSC)ORM1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerORM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ORM1
dbVarORM1
ClinVarORM1
1000_GenomesORM1 
Exome Variant ServerORM1
ExAC (Exome Aggregation Consortium)ORM1 (select the gene name)
Genetic variants : HAPMAP5004
Genomic Variants (DGV)ORM1 [DGVbeta]
Mutations
ICGC Data PortalORM1 
TCGA Data PortalORM1 
Broad Tumor PortalORM1
OASIS PortalORM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICORM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ORM1
DgiDB (Drug Gene Interaction Database)ORM1
DoCM (Curated mutations)ORM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ORM1 (select a term)
intoGenORM1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:117085303-117088759  ENSG00000229314
CONAN: Copy Number AnalysisORM1 
Mutations and Diseases : HGMDORM1
OMIM138600   
MedgenORM1
Genetic Testing Registry ORM1
NextProtP02763 [Medical]
TSGene5004
GENETestsORM1
Huge Navigator ORM1 [HugePedia]
snp3D : Map Gene to Disease5004
BioCentury BCIQORM1
ClinGenORM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5004
Chemical/Pharm GKB GenePA260
Clinical trialORM1
Miscellaneous
canSAR (ICR)ORM1 (select the gene name)
Probes
Litterature
PubMed99 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineORM1
EVEXORM1
GoPubMedORM1
iHOPORM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:14:34 CEST 2016

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