Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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ORM1 (orosomucoid 1)

Identity

Other namesAGP-A
AGP1
HEL-S-153w
ORM
HGNC (Hugo) ORM1
LocusID (NCBI) 5004
Location 9q32
Location_base_pair Starts at 117085303 and ends at 117088759 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ORM1   8498
Cards
Entrez_Gene (NCBI)ORM1  5004  orosomucoid 1
GeneCards (Weizmann)ORM1
Ensembl hg19 (Hinxton)ENSG00000229314 [Gene_View]  chr9:117085303-117088759 [Contig_View]  ORM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000229314 [Gene_View]  chr9:117085303-117088759 [Contig_View]  ORM1 [Vega]
ICGC DataPortalENSG00000229314
cBioPortalORM1
AceView (NCBI)ORM1
Genatlas (Paris)ORM1
WikiGenes5004
SOURCE (Princeton)ORM1
Genomic and cartography
GoldenPath hg19 (UCSC)ORM1  -     chr9:117085303-117088759 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ORM1  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblORM1 - 9q32 [CytoView hg19]  ORM1 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIORM1 [Mapview hg19]  ORM1 [Mapview hg38]
OMIM138600   
Gene and transcription
Genbank (Entrez)AK312035 AK316207 BC007032 BC026238 BC104818
RefSeq transcript (Entrez)NM_000607
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_012108 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ORM1
Cluster EST : UnigeneHs.522356 [ NCBI ]
CGAP (NCI)Hs.522356
Alternative Splicing : Fast-db (Paris)GSHG0030391
Alternative Splicing GalleryENSG00000229314
Gene ExpressionORM1 [ NCBI-GEO ]     ORM1 [ SEEK ]   ORM1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02763 (Uniprot)
NextProtP02763  [Medical]
With graphics : InterProP02763
Splice isoforms : SwissVarP02763 (Swissvar)
Domains : Interpro (EBI)A1A_glycop    Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom   
Related proteins : CluSTrP02763
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
DMDM Disease mutations5004
Blocks (Seattle)P02763
PDB (SRS)3KQ0   
PDB (PDBSum)3KQ0   
PDB (IMB)3KQ0   
PDB (RSDB)3KQ0   
Human Protein AtlasENSG00000229314
Peptide AtlasP02763
HPRD00724
IPIIPI00022429   IPI01015123   
Protein Interaction databases
DIP (DOE-UCLA)P02763
IntAct (EBI)P02763
FunCoupENSG00000229314
BioGRIDORM1
IntegromeDBORM1
STRING (EMBL)ORM1
Ontologies - Pathways
QuickGOP02763
Ontology : AmiGOregulation of immune system process  protein binding  extracellular region  extracellular space  transport  acute-phase response  inflammatory response  negative regulation of interleukin-6 production  negative regulation of tumor necrosis factor production  extracellular exosome  blood microparticle  
Ontology : EGO-EBIregulation of immune system process  protein binding  extracellular region  extracellular space  transport  acute-phase response  inflammatory response  negative regulation of interleukin-6 production  negative regulation of tumor necrosis factor production  extracellular exosome  blood microparticle  
Protein Interaction DatabaseORM1
DoCM (Curated mutations)ORM1
Wikipedia pathwaysORM1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerORM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ORM1
dbVarORM1
ClinVarORM1
1000_GenomesORM1 
Exome Variant ServerORM1
SNP (GeneSNP Utah)ORM1
SNP : HGBaseORM1
Genetic variants : HAPMAPORM1
Genomic Variants (DGV)ORM1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000229314 
Somatic Mutations in Cancer : COSMICORM1 
CONAN: Copy Number AnalysisORM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:117085303-117088759
Mutations and Diseases : HGMDORM1
OMIM138600   
MedgenORM1
NextProtP02763 [Medical]
GENETestsORM1
Disease Genetic AssociationORM1
Huge Navigator ORM1 [HugePedia]  ORM1 [HugeCancerGEM]
snp3D : Map Gene to Disease5004
DGIdb (Drug Gene Interaction db)ORM1
General knowledge
Homologs : HomoloGeneORM1
Homology/Alignments : Family Browser (UCSC)ORM1
Phylogenetic Trees/Animal Genes : TreeFamORM1
Chemical/Protein Interactions : CTD5004
Chemical/Pharm GKB GenePA260
Clinical trialORM1
Cancer Resource (Charite)ENSG00000229314
Other databases
Probes
Litterature
PubMed92 Pubmed reference(s) in Entrez
CoreMineORM1
GoPubMedORM1
iHOPORM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 16:49:06 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.