Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ORM1 (orosomucoid 1)

Identity

Other namesAGP-A
AGP1
ORM
HGNC (Hugo) ORM1
LocusID (NCBI) 5004
Location 9q32
Location_base_pair Starts at 117085303 and ends at 117088759 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ORM1   8498
Cards
Entrez_Gene (NCBI)ORM1  5004  orosomucoid 1
GeneCards (Weizmann)ORM1
Ensembl (Hinxton)ENSG00000229314 [Gene_View]  chr9:117085303-117088759 [Contig_View]  ORM1 [Vega]
AceView (NCBI)ORM1
Genatlas (Paris)ORM1
WikiGenes5004
SOURCE (Princeton)NM_000607
Genomic and cartography
GoldenPath (UCSC)ORM1  -  9q32   chr9:117085303-117088759 +  9q32   [Description]    (hg19-Feb_2009)
EnsemblORM1 - 9q32 [CytoView]
Mapping of homologs : NCBIORM1 [Mapview]
OMIM138600   
Gene and transcription
Genbank (Entrez)AK312035 AK316207 BC007032 BC026238 BC104818
RefSeq transcript (Entrez)NM_000607
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_012108 NT_008470 NW_001839236 NW_004929366
Consensus coding sequences : CCDS (NCBI)ORM1
Cluster EST : UnigeneHs.522356 [ NCBI ]
CGAP (NCI)Hs.522356
Alternative Splicing : Fast-db (Paris)GSHG0030391
Alternative Splicing GalleryENSG00000229314
Gene ExpressionORM1 [ NCBI-GEO ]     ORM1 [ SEEK ]   ORM1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02763 (Uniprot)
NextProtP02763  [Medical]
With graphics : InterProP02763
Splice isoforms : SwissVarP02763 (Swissvar)
Domaine pattern : Prosite (Expaxy)LIPOCALIN (PS00213)   
Domains : Interpro (EBI)A1A_glycop    Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom   
Related proteins : CluSTrP02763
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
DMDM Disease mutations5004
Blocks (Seattle)P02763
PDB (SRS)3KQ0   
PDB (PDBSum)3KQ0   
PDB (IMB)3KQ0   
PDB (RSDB)3KQ0   
Human Protein AtlasENSG00000229314
Peptide AtlasP02763
HPRD00724
IPIIPI00022429   IPI01015123   
Protein Interaction databases
DIP (DOE-UCLA)P02763
IntAct (EBI)P02763
FunCoupENSG00000229314
BioGRIDORM1
InParanoidP02763
Interologous Interaction database P02763
IntegromeDBORM1
STRING (EMBL)ORM1
Ontologies - Pathways
Ontology : AmiGOregulation of immune system process  protein binding  extracellular region  extracellular space  transport  acute-phase response  inflammatory response  
Ontology : EGO-EBIregulation of immune system process  protein binding  extracellular region  extracellular space  transport  acute-phase response  inflammatory response  
REACTOMEORM1
Protein Interaction DatabaseORM1
Wikipedia pathwaysORM1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ORM1
SNP (GeneSNP Utah)ORM1
SNP : HGBaseORM1
Genetic variants : HAPMAPORM1
1000_GenomesORM1 
ICGC programENSG00000229314 
Somatic Mutations in Cancer : COSMICORM1 
CONAN: Copy Number AnalysisORM1 
Mutations and Diseases : HGMDORM1
OMIM138600   
GENETestsORM1
Disease Genetic AssociationORM1
Huge Navigator ORM1 [HugePedia]  ORM1 [HugeCancerGEM]
Genomic VariantsORM1  ORM1 [DGVbeta]
Exome VariantORM1
dbVarORM1
ClinVarORM1
snp3D : Map Gene to Disease5004
General knowledge
Homologs : HomoloGeneORM1
Homology/Alignments : Family Browser (UCSC)ORM1
Phylogenetic Trees/Animal Genes : TreeFamORM1
Chemical/Protein Interactions : CTD5004
Chemical/Pharm GKB GenePA260
Clinical trialORM1
Cancer Resource (Charite)ENSG00000229314
Other databases
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
CoreMineORM1
iHOPORM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:11:46 CEST 2014

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