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ORM1 (orosomucoid 1)

Identity

Alias (NCBI)AGP-A
AGP1
HEL-S-153w
ORM
HGNC (Hugo) ORM1
LocusID (NCBI) 5004
Atlas_Id 45955
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 114322628 and ends at 114326479 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ORM1 (9q32) / ORM1 (9q32)ORM1 (9q32) / TIMP2 (17q25.3)RIC8A (11p15.5) / ORM1 (9q32)
SMARCB1 (22q11.23) / ORM1 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ORM1   8498
Cards
Entrez_Gene (NCBI)ORM1    orosomucoid 1
AliasesAGP-A; AGP1; HEL-S-153w; ORM
GeneCards (Weizmann)ORM1
Ensembl hg19 (Hinxton)ENSG00000229314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229314 [Gene_View]  ENSG00000229314 [Sequence]  chr9:114322628-114326479 [Contig_View]  ORM1 [Vega]
ICGC DataPortalENSG00000229314
TCGA cBioPortalORM1
AceView (NCBI)ORM1
Genatlas (Paris)ORM1
SOURCE (Princeton)ORM1
Genetics Home Reference (NIH)ORM1
Genomic and cartography
GoldenPath hg38 (UCSC)ORM1  -     chr9:114322628-114326479 +  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ORM1  -     9q32   [Description]    (hg19-Feb_2009)
GoldenPathORM1 - 9q32 [CytoView hg19]  ORM1 - 9q32 [CytoView hg38]
ImmunoBaseENSG00000229314
Genome Data Viewer NCBIORM1 [Mapview hg19]  
OMIM138600   
Gene and transcription
Genbank (Entrez)AK312035 AK316207 BC007032 BC026238 BC104818
RefSeq transcript (Entrez)NM_000607
Consensus coding sequences : CCDS (NCBI)ORM1
Gene ExpressionORM1 [ NCBI-GEO ]   ORM1 [ EBI - ARRAY_EXPRESS ]   ORM1 [ SEEK ]   ORM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ORM1 [ Firebrowse - Broad ]
GenevisibleExpression of ORM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5004
GTEX Portal (Tissue expression)ORM1
Human Protein AtlasENSG00000229314-ORM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02763   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02763  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02763
PhosPhoSitePlusP02763
Domains : Interpro (EBI)A1A_glycop    Calycin    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)ORM1
PDB (RSDB)3KQ0   
PDB Europe3KQ0   
PDB (PDBSum)3KQ0   
PDB (IMB)3KQ0   
Structural Biology KnowledgeBase3KQ0   
SCOP (Structural Classification of Proteins)3KQ0   
CATH (Classification of proteins structures)3KQ0   
SuperfamilyP02763
AlphaFold pdb e-kbP02763   
Human Protein Atlas [tissue]ENSG00000229314-ORM1 [tissue]
HPRD00724
Protein Interaction databases
DIP (DOE-UCLA)P02763
IntAct (EBI)P02763
BioGRIDORM1
STRING (EMBL)ORM1
ZODIACORM1
Ontologies - Pathways
QuickGOP02763
Ontology : AmiGOplatelet degranulation  regulation of immune system process  protein binding  extracellular region  extracellular region  extracellular region  extracellular space  extracellular space  extracellular space  acute-phase response  inflammatory response  platelet alpha granule lumen  negative regulation of interleukin-6 production  negative regulation of tumor necrosis factor production  positive regulation of interleukin-1 beta production  positive regulation of interleukin-1 production  positive regulation of tumor necrosis factor production  specific granule lumen  neutrophil degranulation  collagen-containing extracellular matrix  extracellular exosome  blood microparticle  tertiary granule lumen  
Ontology : EGO-EBIplatelet degranulation  regulation of immune system process  protein binding  extracellular region  extracellular region  extracellular region  extracellular space  extracellular space  extracellular space  acute-phase response  inflammatory response  platelet alpha granule lumen  negative regulation of interleukin-6 production  negative regulation of tumor necrosis factor production  positive regulation of interleukin-1 beta production  positive regulation of interleukin-1 production  positive regulation of tumor necrosis factor production  specific granule lumen  neutrophil degranulation  collagen-containing extracellular matrix  extracellular exosome  blood microparticle  tertiary granule lumen  
NDEx NetworkORM1
Atlas of Cancer Signalling NetworkORM1
Wikipedia pathwaysORM1
Orthology - Evolution
OrthoDB5004
GeneTree (enSembl)ENSG00000229314
Phylogenetic Trees/Animal Genes : TreeFamORM1
Homologs : HomoloGeneORM1
Homology/Alignments : Family Browser (UCSC)ORM1
Gene fusions - Rearrangements
Fusion : QuiverORM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerORM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ORM1
dbVarORM1
ClinVarORM1
MonarchORM1
1000_GenomesORM1 
Exome Variant ServerORM1
GNOMAD BrowserENSG00000229314
Varsome BrowserORM1
ACMGORM1 variants
VarityP02763
Genomic Variants (DGV)ORM1 [DGVbeta]
DECIPHERORM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisORM1 
Mutations
ICGC Data PortalORM1 
TCGA Data PortalORM1 
Broad Tumor PortalORM1
OASIS PortalORM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICORM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DORM1
Mutations and Diseases : HGMDORM1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaORM1
DgiDB (Drug Gene Interaction Database)ORM1
DoCM (Curated mutations)ORM1
CIViC (Clinical Interpretations of Variants in Cancer)ORM1
Cancer3DORM1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138600   
Orphanet
DisGeNETORM1
MedgenORM1
Genetic Testing Registry ORM1
NextProtP02763 [Medical]
GENETestsORM1
Target ValidationORM1
Huge Navigator ORM1 [HugePedia]
ClinGenORM1
Clinical trials, drugs, therapy
MyCancerGenomeORM1
Protein Interactions : CTDORM1
Pharm GKB GenePA260
PharosP02763
Clinical trialORM1
Miscellaneous
canSAR (ICR)ORM1
HarmonizomeORM1
DataMed IndexORM1
Probes
Litterature
PubMed117 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXORM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:23:53 CEST 2021

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