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ORM2 (orosomucoid 2)

Identity

Alias_namestype 2
Alias_symbol (synonym)AGP-B
AGP-B'
AGP2
Other alias
HGNC (Hugo) ORM2
LocusID (NCBI) 5005
Atlas_Id 50042
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 117092069 and ends at 117095536 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ORM2   8499
Cards
Entrez_Gene (NCBI)ORM2  5005  orosomucoid 2
AliasesAGP-B; AGP-B'; AGP2
GeneCards (Weizmann)ORM2
Ensembl hg19 (Hinxton)ENSG00000228278 [Gene_View]  chr9:117092069-117095536 [Contig_View]  ORM2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000228278 [Gene_View]  chr9:117092069-117095536 [Contig_View]  ORM2 [Vega]
ICGC DataPortalENSG00000228278
TCGA cBioPortalORM2
AceView (NCBI)ORM2
Genatlas (Paris)ORM2
WikiGenes5005
SOURCE (Princeton)ORM2
Genetics Home Reference (NIH)ORM2
Genomic and cartography
GoldenPath hg19 (UCSC)ORM2  -     chr9:117092069-117095536 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ORM2  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblORM2 - 9q32 [CytoView hg19]  ORM2 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIORM2 [Mapview hg19]  ORM2 [Mapview hg38]
OMIM138610   
Gene and transcription
Genbank (Entrez)AK303760 AK312226 AV661485 BC015964 BC056239
RefSeq transcript (Entrez)NM_000608
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ORM2
Cluster EST : UnigeneHs.719954 [ NCBI ]
CGAP (NCI)Hs.719954
Alternative Splicing GalleryENSG00000228278
Gene ExpressionORM2 [ NCBI-GEO ]   ORM2 [ EBI - ARRAY_EXPRESS ]   ORM2 [ SEEK ]   ORM2 [ MEM ]
Gene Expression Viewer (FireBrowse)ORM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5005
GTEX Portal (Tissue expression)ORM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19652   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP19652  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP19652
Splice isoforms : SwissVarP19652
PhosPhoSitePlusP19652
Domains : Interpro (EBI)A1A_glycop    Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)ORM2
DMDM Disease mutations5005
Blocks (Seattle)ORM2
PDB (SRS)3APU    3APV    3APW    3APX   
PDB (PDBSum)3APU    3APV    3APW    3APX   
PDB (IMB)3APU    3APV    3APW    3APX   
PDB (RSDB)3APU    3APV    3APW    3APX   
Structural Biology KnowledgeBase3APU    3APV    3APW    3APX   
SCOP (Structural Classification of Proteins)3APU    3APV    3APW    3APX   
CATH (Classification of proteins structures)3APU    3APV    3APW    3APX   
SuperfamilyP19652
Human Protein AtlasENSG00000228278
Peptide AtlasP19652
HPRD00725
IPIIPI00020091   IPI00909335   
Protein Interaction databases
DIP (DOE-UCLA)P19652
IntAct (EBI)P19652
FunCoupENSG00000228278
BioGRIDORM2
STRING (EMBL)ORM2
ZODIACORM2
Ontologies - Pathways
QuickGOP19652
Ontology : AmiGOplatelet degranulation  regulation of immune system process  extracellular region  extracellular space  acute-phase response  platelet alpha granule lumen  extracellular exosome  blood microparticle  
Ontology : EGO-EBIplatelet degranulation  regulation of immune system process  extracellular region  extracellular space  acute-phase response  platelet alpha granule lumen  extracellular exosome  blood microparticle  
NDEx NetworkORM2
Atlas of Cancer Signalling NetworkORM2
Wikipedia pathwaysORM2
Orthology - Evolution
OrthoDB5005
GeneTree (enSembl)ENSG00000228278
Phylogenetic Trees/Animal Genes : TreeFamORM2
HOVERGENP19652
HOGENOMP19652
Homologs : HomoloGeneORM2
Homology/Alignments : Family Browser (UCSC)ORM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerORM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ORM2
dbVarORM2
ClinVarORM2
1000_GenomesORM2 
Exome Variant ServerORM2
ExAC (Exome Aggregation Consortium)ORM2 (select the gene name)
Genetic variants : HAPMAP5005
Genomic Variants (DGV)ORM2 [DGVbeta]
DECIPHER (Syndromes)9:117092069-117095536  ENSG00000228278
CONAN: Copy Number AnalysisORM2 
Mutations
ICGC Data PortalORM2 
TCGA Data PortalORM2 
Broad Tumor PortalORM2
OASIS PortalORM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICORM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDORM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ORM2
DgiDB (Drug Gene Interaction Database)ORM2
DoCM (Curated mutations)ORM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ORM2 (select a term)
intoGenORM2
Cancer3DORM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138610   
Orphanet
MedgenORM2
Genetic Testing Registry ORM2
NextProtP19652 [Medical]
TSGene5005
GENETestsORM2
Huge Navigator ORM2 [HugePedia]
snp3D : Map Gene to Disease5005
BioCentury BCIQORM2
ClinGenORM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5005
Chemical/Pharm GKB GenePA32818
Clinical trialORM2
Miscellaneous
canSAR (ICR)ORM2 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineORM2
EVEXORM2
GoPubMedORM2
iHOPORM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:10 CEST 2017

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