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ORMDL2 (ORMDL sphingolipid biosynthesis regulator 2)

Identity

Alias_namesORM1 (S. cerevisiae)-like 2
ORM1-like 2 (S. cerevisiae)
Alias_symbol (synonym)HSPC160
adoplin-2
MST095
MSTP095
Other alias
HGNC (Hugo) ORMDL2
LocusID (NCBI) 29095
Atlas_Id 71548
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55818022 and ends at 55821175 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ORMDL2   16037
Cards
Entrez_Gene (NCBI)ORMDL2  29095  ORMDL sphingolipid biosynthesis regulator 2
AliasesHSPC160; MST095; MSTP095; adoplin-2
GeneCards (Weizmann)ORMDL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:55818022-55821175 [Contig_View]  ORMDL2 [Vega]
TCGA cBioPortalORMDL2
AceView (NCBI)ORMDL2
Genatlas (Paris)ORMDL2
WikiGenes29095
SOURCE (Princeton)ORMDL2
Genetics Home Reference (NIH)ORMDL2
Genomic and cartography
GoldenPath hg38 (UCSC)ORMDL2  -     chr12:55818022-55821175 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ORMDL2  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblORMDL2 - 12q13.2 [CytoView hg19]  ORMDL2 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIORMDL2 [Mapview hg19]  ORMDL2 [Mapview hg38]
OMIM610074   
Gene and transcription
Genbank (Entrez)AB064961 AF161509 AF173375 AF395705 AF395706
RefSeq transcript (Entrez)NM_014182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ORMDL2
Cluster EST : UnigeneHs.534450 [ NCBI ]
CGAP (NCI)Hs.534450
Gene ExpressionORMDL2 [ NCBI-GEO ]   ORMDL2 [ EBI - ARRAY_EXPRESS ]   ORMDL2 [ SEEK ]   ORMDL2 [ MEM ]
Gene Expression Viewer (FireBrowse)ORMDL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29095
GTEX Portal (Tissue expression)ORMDL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53FV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53FV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53FV1
Splice isoforms : SwissVarQ53FV1
PhosPhoSitePlusQ53FV1
Domains : Interpro (EBI)ORMDL    ORML2   
Domain families : Pfam (Sanger)ORMDL (PF04061)   
Domain families : Pfam (NCBI)pfam04061   
Conserved Domain (NCBI)ORMDL2
DMDM Disease mutations29095
Blocks (Seattle)ORMDL2
SuperfamilyQ53FV1
Peptide AtlasQ53FV1
HPRD17802
IPIIPI00171701   IPI01021352   IPI01022285   
Protein Interaction databases
DIP (DOE-UCLA)Q53FV1
IntAct (EBI)Q53FV1
BioGRIDORMDL2
STRING (EMBL)ORMDL2
ZODIACORMDL2
Ontologies - Pathways
QuickGOQ53FV1
Ontology : AmiGOendoplasmic reticulum  ceramide metabolic process  integral component of membrane  SPOTS complex  cellular sphingolipid homeostasis  negative regulation of ceramide biosynthetic process  
Ontology : EGO-EBIendoplasmic reticulum  ceramide metabolic process  integral component of membrane  SPOTS complex  cellular sphingolipid homeostasis  negative regulation of ceramide biosynthetic process  
NDEx NetworkORMDL2
Atlas of Cancer Signalling NetworkORMDL2
Wikipedia pathwaysORMDL2
Orthology - Evolution
OrthoDB29095
Phylogenetic Trees/Animal Genes : TreeFamORMDL2
HOVERGENQ53FV1
HOGENOMQ53FV1
Homologs : HomoloGeneORMDL2
Homology/Alignments : Family Browser (UCSC)ORMDL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerORMDL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ORMDL2
dbVarORMDL2
ClinVarORMDL2
1000_GenomesORMDL2 
Exome Variant ServerORMDL2
ExAC (Exome Aggregation Consortium)ORMDL2 (select the gene name)
Genetic variants : HAPMAP29095
Genomic Variants (DGV)ORMDL2 [DGVbeta]
DECIPHERORMDL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisORMDL2 
Mutations
ICGC Data PortalORMDL2 
TCGA Data PortalORMDL2 
Broad Tumor PortalORMDL2
OASIS PortalORMDL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICORMDL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDORMDL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ORMDL2
DgiDB (Drug Gene Interaction Database)ORMDL2
DoCM (Curated mutations)ORMDL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ORMDL2 (select a term)
intoGenORMDL2
Cancer3DORMDL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610074   
Orphanet
MedgenORMDL2
Genetic Testing Registry ORMDL2
NextProtQ53FV1 [Medical]
TSGene29095
GENETestsORMDL2
Target ValidationORMDL2
Huge Navigator ORMDL2 [HugePedia]
snp3D : Map Gene to Disease29095
BioCentury BCIQORMDL2
ClinGenORMDL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29095
Chemical/Pharm GKB GenePA32820
Clinical trialORMDL2
Miscellaneous
canSAR (ICR)ORMDL2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineORMDL2
EVEXORMDL2
GoPubMedORMDL2
iHOPORMDL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:35:10 CEST 2017

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