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OSBPL6 (oxysterol binding protein like 6)

Identity

Alias_namesoxysterol binding protein-like 6
Alias_symbol (synonym)ORP6
Other alias
HGNC (Hugo) OSBPL6
LocusID (NCBI) 114880
Atlas_Id 71554
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 178194481 and ends at 178399433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / OSBPL6 (2q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSBPL6   16388
Cards
Entrez_Gene (NCBI)OSBPL6  114880  oxysterol binding protein like 6
AliasesORP6
GeneCards (Weizmann)OSBPL6
Ensembl hg19 (Hinxton)ENSG00000079156 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079156 [Gene_View]  chr2:178194481-178399433 [Contig_View]  OSBPL6 [Vega]
ICGC DataPortalENSG00000079156
TCGA cBioPortalOSBPL6
AceView (NCBI)OSBPL6
Genatlas (Paris)OSBPL6
WikiGenes114880
SOURCE (Princeton)OSBPL6
Genetics Home Reference (NIH)OSBPL6
Genomic and cartography
GoldenPath hg38 (UCSC)OSBPL6  -     chr2:178194481-178399433 +  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSBPL6  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblOSBPL6 - 2q31.2 [CytoView hg19]  OSBPL6 - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBIOSBPL6 [Mapview hg19]  OSBPL6 [Mapview hg38]
OMIM606734   
Gene and transcription
Genbank (Entrez)AB208898 AF323728 AF392448 AF462443 AK025168
RefSeq transcript (Entrez)NM_001201480 NM_001201481 NM_001201482 NM_032523 NM_145739
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSBPL6
Cluster EST : UnigeneHs.318775 [ NCBI ]
CGAP (NCI)Hs.318775
Alternative Splicing GalleryENSG00000079156
Gene ExpressionOSBPL6 [ NCBI-GEO ]   OSBPL6 [ EBI - ARRAY_EXPRESS ]   OSBPL6 [ SEEK ]   OSBPL6 [ MEM ]
Gene Expression Viewer (FireBrowse)OSBPL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114880
GTEX Portal (Tissue expression)OSBPL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZF3
Splice isoforms : SwissVarQ9BZF3
PhosPhoSitePlusQ9BZF3
Domaine pattern : Prosite (Expaxy)OSBP (PS01013)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Oxysterol-bd    Oxysterol-bd_CS    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)Oxysterol_BP (PF01237)   
Domain families : Pfam (NCBI)pfam01237   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)OSBPL6
DMDM Disease mutations114880
Blocks (Seattle)OSBPL6
SuperfamilyQ9BZF3
Human Protein AtlasENSG00000079156
Peptide AtlasQ9BZF3
HPRD09476
IPIIPI00220568   IPI00385134   IPI00167804   IPI00908339   IPI00789184   IPI00448901   IPI00384275   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZF3
IntAct (EBI)Q9BZF3
FunCoupENSG00000079156
BioGRIDOSBPL6
STRING (EMBL)OSBPL6
ZODIACOSBPL6
Ontologies - Pathways
QuickGOQ9BZF3
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  cytosol  cytosol  plasma membrane  bile acid biosynthetic process  lipid binding  sterol transporter activity  sterol transport  nuclear membrane  perinuclear endoplasmic reticulum  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  cytosol  cytosol  plasma membrane  bile acid biosynthetic process  lipid binding  sterol transporter activity  sterol transport  nuclear membrane  perinuclear endoplasmic reticulum  
NDEx NetworkOSBPL6
Atlas of Cancer Signalling NetworkOSBPL6
Wikipedia pathwaysOSBPL6
Orthology - Evolution
OrthoDB114880
GeneTree (enSembl)ENSG00000079156
Phylogenetic Trees/Animal Genes : TreeFamOSBPL6
HOVERGENQ9BZF3
HOGENOMQ9BZF3
Homologs : HomoloGeneOSBPL6
Homology/Alignments : Family Browser (UCSC)OSBPL6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSBPL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSBPL6
dbVarOSBPL6
ClinVarOSBPL6
1000_GenomesOSBPL6 
Exome Variant ServerOSBPL6
ExAC (Exome Aggregation Consortium)OSBPL6 (select the gene name)
Genetic variants : HAPMAP114880
Genomic Variants (DGV)OSBPL6 [DGVbeta]
DECIPHEROSBPL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSBPL6 
Mutations
ICGC Data PortalOSBPL6 
TCGA Data PortalOSBPL6 
Broad Tumor PortalOSBPL6
OASIS PortalOSBPL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSBPL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSBPL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OSBPL6
DgiDB (Drug Gene Interaction Database)OSBPL6
DoCM (Curated mutations)OSBPL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSBPL6 (select a term)
intoGenOSBPL6
Cancer3DOSBPL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606734   
Orphanet
MedgenOSBPL6
Genetic Testing Registry OSBPL6
NextProtQ9BZF3 [Medical]
TSGene114880
GENETestsOSBPL6
Target ValidationOSBPL6
Huge Navigator OSBPL6 [HugePedia]
snp3D : Map Gene to Disease114880
BioCentury BCIQOSBPL6
ClinGenOSBPL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114880
Chemical/Pharm GKB GenePA32830
Clinical trialOSBPL6
Miscellaneous
canSAR (ICR)OSBPL6 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSBPL6
EVEXOSBPL6
GoPubMedOSBPL6
iHOPOSBPL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:11 CEST 2017

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