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OSBPL9 (oxysterol binding protein like 9)

Identity

Alias_namesoxysterol binding protein-like 9
Other aliasORP-9
ORP9
HGNC (Hugo) OSBPL9
LocusID (NCBI) 114883
Atlas_Id 71556
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 51729814 and ends at 51789219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATPAF1 (1p33) / OSBPL9 (1p32.3)EPS15 (1p32.3) / OSBPL9 (1p32.3)OSBPL9 (1p32.3) / BTF3L4 (1p32.3)
OSBPL9 (1p32.3) / C1orf185 (1p32.3)OSBPL9 (1p32.3) / C1orf87 (1p32.1)OSBPL9 (1p32.3) / OSBPL9 (1p32.3)
OSBPL9 (1p32.3) / SERINC5 (5q14.1)OSBPL9 (1p32.3) / TBC1D3 (17q12)UPF3A (13q34) / OSBPL9 (1p32.3)
OSBPL9 C1orf87OSBPL9 SERINC5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSBPL9   16386
Cards
Entrez_Gene (NCBI)OSBPL9  114883  oxysterol binding protein like 9
AliasesORP-9; ORP9
GeneCards (Weizmann)OSBPL9
Ensembl hg19 (Hinxton)ENSG00000117859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117859 [Gene_View]  chr1:51729814-51789219 [Contig_View]  OSBPL9 [Vega]
ICGC DataPortalENSG00000117859
TCGA cBioPortalOSBPL9
AceView (NCBI)OSBPL9
Genatlas (Paris)OSBPL9
WikiGenes114883
SOURCE (Princeton)OSBPL9
Genetics Home Reference (NIH)OSBPL9
Genomic and cartography
GoldenPath hg38 (UCSC)OSBPL9  -     chr1:51729814-51789219 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSBPL9  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblOSBPL9 - 1p32.3 [CytoView hg19]  OSBPL9 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIOSBPL9 [Mapview hg19]  OSBPL9 [Mapview hg38]
OMIM606737   
Gene and transcription
Genbank (Entrez)AB208851 AF392445 AK022554 AK027535 AK027707
RefSeq transcript (Entrez)NM_001330580 NM_001350208 NM_001350209 NM_001350210 NM_024586 NM_148904 NM_148905 NM_148906 NM_148907 NM_148908 NM_148909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSBPL9
Cluster EST : UnigeneHs.738830 [ NCBI ]
CGAP (NCI)Hs.738830
Alternative Splicing GalleryENSG00000117859
Gene ExpressionOSBPL9 [ NCBI-GEO ]   OSBPL9 [ EBI - ARRAY_EXPRESS ]   OSBPL9 [ SEEK ]   OSBPL9 [ MEM ]
Gene Expression Viewer (FireBrowse)OSBPL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114883
GTEX Portal (Tissue expression)OSBPL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SU4
Splice isoforms : SwissVarQ96SU4
PhosPhoSitePlusQ96SU4
Domaine pattern : Prosite (Expaxy)OSBP (PS01013)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)Oxysterol-bd    Oxysterol-bd_CS    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)Oxysterol_BP (PF01237)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam01237    pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)OSBPL9
DMDM Disease mutations114883
Blocks (Seattle)OSBPL9
SuperfamilyQ96SU4
Human Protein AtlasENSG00000117859
Peptide AtlasQ96SU4
HPRD09479
IPIIPI00077853   IPI00843808   IPI00746470   IPI00478893   IPI00218449   IPI01012617   IPI00556517   IPI01015350   IPI00307359   IPI00170891   IPI00979985   IPI00982221   IPI01013784   IPI00981355   IPI00985420   IPI00984298   IPI00976251   IPI00983403   IPI00977559   IPI00975953   
Protein Interaction databases
DIP (DOE-UCLA)Q96SU4
IntAct (EBI)Q96SU4
FunCoupENSG00000117859
BioGRIDOSBPL9
STRING (EMBL)OSBPL9
ZODIACOSBPL9
Ontologies - Pathways
QuickGOQ96SU4
Ontology : AmiGOGolgi apparatus  cytosol  cytosol  bile acid biosynthetic process  lipid binding  sterol transporter activity  sterol transport  late endosome membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi apparatus  cytosol  cytosol  bile acid biosynthetic process  lipid binding  sterol transporter activity  sterol transport  late endosome membrane  intracellular membrane-bounded organelle  
NDEx NetworkOSBPL9
Atlas of Cancer Signalling NetworkOSBPL9
Wikipedia pathwaysOSBPL9
Orthology - Evolution
OrthoDB114883
GeneTree (enSembl)ENSG00000117859
Phylogenetic Trees/Animal Genes : TreeFamOSBPL9
HOVERGENQ96SU4
HOGENOMQ96SU4
Homologs : HomoloGeneOSBPL9
Homology/Alignments : Family Browser (UCSC)OSBPL9
Gene fusions - Rearrangements
Fusion: TCGAOSBPL9 C1orf87
Fusion: TCGAOSBPL9 SERINC5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSBPL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSBPL9
dbVarOSBPL9
ClinVarOSBPL9
1000_GenomesOSBPL9 
Exome Variant ServerOSBPL9
ExAC (Exome Aggregation Consortium)OSBPL9 (select the gene name)
Genetic variants : HAPMAP114883
Genomic Variants (DGV)OSBPL9 [DGVbeta]
DECIPHEROSBPL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSBPL9 
Mutations
ICGC Data PortalOSBPL9 
TCGA Data PortalOSBPL9 
Broad Tumor PortalOSBPL9
OASIS PortalOSBPL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSBPL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSBPL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OSBPL9
DgiDB (Drug Gene Interaction Database)OSBPL9
DoCM (Curated mutations)OSBPL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSBPL9 (select a term)
intoGenOSBPL9
Cancer3DOSBPL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606737   
Orphanet
MedgenOSBPL9
Genetic Testing Registry OSBPL9
NextProtQ96SU4 [Medical]
TSGene114883
GENETestsOSBPL9
Target ValidationOSBPL9
Huge Navigator OSBPL9 [HugePedia]
snp3D : Map Gene to Disease114883
BioCentury BCIQOSBPL9
ClinGenOSBPL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114883
Chemical/Pharm GKB GenePA32833
Clinical trialOSBPL9
Miscellaneous
canSAR (ICR)OSBPL9 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSBPL9
EVEXOSBPL9
GoPubMedOSBPL9
iHOPOSBPL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:12 CEST 2017

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