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OSCAR (osteoclast associated, immunoglobulin-like receptor)

Identity

Other aliasPIGR3
PIgR-3
HGNC (Hugo) OSCAR
LocusID (NCBI) 126014
Atlas_Id 71557
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54094668 and ends at 54102686 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSCAR   29960
Cards
Entrez_Gene (NCBI)OSCAR  126014  osteoclast associated, immunoglobulin-like receptor
AliasesPIGR3; PIgR-3
GeneCards (Weizmann)OSCAR
Ensembl hg19 (Hinxton)ENSG00000170909 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170909 [Gene_View]  chr19:54094668-54102686 [Contig_View]  OSCAR [Vega]
ICGC DataPortalENSG00000170909
TCGA cBioPortalOSCAR
AceView (NCBI)OSCAR
Genatlas (Paris)OSCAR
WikiGenes126014
SOURCE (Princeton)OSCAR
Genetics Home Reference (NIH)OSCAR
Genomic and cartography
GoldenPath hg38 (UCSC)OSCAR  -     chr19:54094668-54102686 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSCAR  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblOSCAR - 19q13.42 [CytoView hg19]  OSCAR - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIOSCAR [Mapview hg19]  OSCAR [Mapview hg38]
OMIM606862   
Gene and transcription
Genbank (Entrez)AF251702 AF391162 AF391163 AF391164 AF474152
RefSeq transcript (Entrez)NM_001282349 NM_001282350 NM_130771 NM_133168 NM_133169 NM_206817 NM_206818
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187693 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061
Consensus coding sequences : CCDS (NCBI)OSCAR
Cluster EST : UnigeneHs.347655 [ NCBI ]
CGAP (NCI)Hs.347655
Alternative Splicing GalleryENSG00000170909
Gene ExpressionOSCAR [ NCBI-GEO ]   OSCAR [ EBI - ARRAY_EXPRESS ]   OSCAR [ SEEK ]   OSCAR [ MEM ]
Gene Expression Viewer (FireBrowse)OSCAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126014
GTEX Portal (Tissue expression)OSCAR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYS5
Splice isoforms : SwissVarQ8IYS5
PhosPhoSitePlusQ8IYS5
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)OSCAR
DMDM Disease mutations126014
Blocks (Seattle)OSCAR
PDB (SRS)5CJ8    5CJB    5EIQ    5EIV   
PDB (PDBSum)5CJ8    5CJB    5EIQ    5EIV   
PDB (IMB)5CJ8    5CJB    5EIQ    5EIV   
PDB (RSDB)5CJ8    5CJB    5EIQ    5EIV   
Structural Biology KnowledgeBase5CJ8    5CJB    5EIQ    5EIV   
SCOP (Structural Classification of Proteins)5CJ8    5CJB    5EIQ    5EIV   
CATH (Classification of proteins structures)5CJ8    5CJB    5EIQ    5EIV   
SuperfamilyQ8IYS5
Human Protein AtlasENSG00000170909
Peptide AtlasQ8IYS5
HPRD06035
IPIIPI00647357   IPI00292153   IPI00178869   IPI00657951   IPI00872241   IPI00107731   IPI00409588   IPI00658071   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYS5
IntAct (EBI)Q8IYS5
FunCoupENSG00000170909
BioGRIDOSCAR
STRING (EMBL)OSCAR
ZODIACOSCAR
Ontologies - Pathways
QuickGOQ8IYS5
Ontology : AmiGOextracellular region  plasma membrane  integral component of membrane  specific granule lumen  neutrophil degranulation  regulation of immune response  extracellular exosome  tertiary granule lumen  
Ontology : EGO-EBIextracellular region  plasma membrane  integral component of membrane  specific granule lumen  neutrophil degranulation  regulation of immune response  extracellular exosome  tertiary granule lumen  
Pathways : KEGGOsteoclast differentiation   
NDEx NetworkOSCAR
Atlas of Cancer Signalling NetworkOSCAR
Wikipedia pathwaysOSCAR
Orthology - Evolution
OrthoDB126014
GeneTree (enSembl)ENSG00000170909
Phylogenetic Trees/Animal Genes : TreeFamOSCAR
HOVERGENQ8IYS5
HOGENOMQ8IYS5
Homologs : HomoloGeneOSCAR
Homology/Alignments : Family Browser (UCSC)OSCAR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSCAR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSCAR
dbVarOSCAR
ClinVarOSCAR
1000_GenomesOSCAR 
Exome Variant ServerOSCAR
ExAC (Exome Aggregation Consortium)OSCAR (select the gene name)
Genetic variants : HAPMAP126014
Genomic Variants (DGV)OSCAR [DGVbeta]
DECIPHEROSCAR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSCAR 
Mutations
ICGC Data PortalOSCAR 
TCGA Data PortalOSCAR 
Broad Tumor PortalOSCAR
OASIS PortalOSCAR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSCAR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSCAR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OSCAR
DgiDB (Drug Gene Interaction Database)OSCAR
DoCM (Curated mutations)OSCAR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSCAR (select a term)
intoGenOSCAR
Cancer3DOSCAR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606862   
Orphanet
MedgenOSCAR
Genetic Testing Registry OSCAR
NextProtQ8IYS5 [Medical]
TSGene126014
GENETestsOSCAR
Target ValidationOSCAR
Huge Navigator OSCAR [HugePedia]
snp3D : Map Gene to Disease126014
BioCentury BCIQOSCAR
ClinGenOSCAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126014
Chemical/Pharm GKB GenePA162398474
Clinical trialOSCAR
Miscellaneous
canSAR (ICR)OSCAR (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSCAR
EVEXOSCAR
GoPubMedOSCAR
iHOPOSCAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:35:12 CEST 2017

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