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OSCP1 (organic solute carrier partner 1)

Identity

Alias_namesC1orf102
chromosome 1 open reading frame 102
Alias_symbol (synonym)NOR1
Other alias
HGNC (Hugo) OSCP1
LocusID (NCBI) 127700
Atlas_Id 51050
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36417906 and ends at 36450485 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EWSR1 (22q12.2) / OSCP1 (1p34.3)OSCP1 (1p34.3) / BMS1 (10q11.21)OSCP1 (1p34.3) / EWSR1 (22q12.2)
OSCP1 (1p34.3) / SOX2-OT (3q26.33)OSCP1 (1p34.3) / TAF15 (17q12)OSCP1 (1p34.3) / TCF12 (15q21.3)
SOX2-OT (3q26.33) / OSCP1 (1p34.3)TAF15 (17q12) / OSCP1 (1p34.3)TCF12 (15q21.3) / OSCP1 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)OSCP1   29971
Cards
Entrez_Gene (NCBI)OSCP1  127700  organic solute carrier partner 1
AliasesC1orf102; NOR1
GeneCards (Weizmann)OSCP1
Ensembl hg19 (Hinxton)ENSG00000116885 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116885 [Gene_View]  chr1:36417906-36450485 [Contig_View]  OSCP1 [Vega]
ICGC DataPortalENSG00000116885
TCGA cBioPortalOSCP1
AceView (NCBI)OSCP1
Genatlas (Paris)OSCP1
WikiGenes127700
SOURCE (Princeton)OSCP1
Genetics Home Reference (NIH)OSCP1
Genomic and cartography
GoldenPath hg38 (UCSC)OSCP1  -     chr1:36417906-36450485 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSCP1  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblOSCP1 - 1p34.3 [CytoView hg19]  OSCP1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIOSCP1 [Mapview hg19]  OSCP1 [Mapview hg38]
OMIM608854   
Gene and transcription
Genbank (Entrez)AA505729 AB079075 AF086535 AF462348 AK098541
RefSeq transcript (Entrez)NM_001330493 NM_145047 NM_206837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSCP1
Cluster EST : UnigeneHs.202207 [ NCBI ]
CGAP (NCI)Hs.202207
Alternative Splicing GalleryENSG00000116885
Gene ExpressionOSCP1 [ NCBI-GEO ]   OSCP1 [ EBI - ARRAY_EXPRESS ]   OSCP1 [ SEEK ]   OSCP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OSCP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127700
GTEX Portal (Tissue expression)OSCP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVF1
Splice isoforms : SwissVarQ8WVF1
PhosPhoSitePlusQ8WVF1
Domains : Interpro (EBI)OSCP1   
Domain families : Pfam (Sanger)Oscp1 (PF10188)   
Domain families : Pfam (NCBI)pfam10188   
Conserved Domain (NCBI)OSCP1
DMDM Disease mutations127700
Blocks (Seattle)OSCP1
SuperfamilyQ8WVF1
Human Protein AtlasENSG00000116885
Peptide AtlasQ8WVF1
HPRD16393
IPIIPI00154774   IPI00335636   IPI00969199   IPI00409599   IPI00954428   IPI00964576   IPI00965285   IPI00978923   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVF1
IntAct (EBI)Q8WVF1
FunCoupENSG00000116885
BioGRIDOSCP1
STRING (EMBL)OSCP1
ZODIACOSCP1
Ontologies - Pathways
QuickGOQ8WVF1
Ontology : AmiGOtransport  basal plasma membrane  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBItransport  basal plasma membrane  positive regulation of protein targeting to mitochondrion  
NDEx NetworkOSCP1
Atlas of Cancer Signalling NetworkOSCP1
Wikipedia pathwaysOSCP1
Orthology - Evolution
OrthoDB127700
GeneTree (enSembl)ENSG00000116885
Phylogenetic Trees/Animal Genes : TreeFamOSCP1
HOVERGENQ8WVF1
HOGENOMQ8WVF1
Homologs : HomoloGeneOSCP1
Homology/Alignments : Family Browser (UCSC)OSCP1
Gene fusions - Rearrangements
Fusion : MitelmanOSCP1/SOX2-OT [1p34.3/3q26.33]  
Fusion : MitelmanSOX2-OT/OSCP1 [3q26.33/1p34.3]  [t(1;3)(p34;q26)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSCP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSCP1
dbVarOSCP1
ClinVarOSCP1
1000_GenomesOSCP1 
Exome Variant ServerOSCP1
ExAC (Exome Aggregation Consortium)OSCP1 (select the gene name)
Genetic variants : HAPMAP127700
Genomic Variants (DGV)OSCP1 [DGVbeta]
DECIPHEROSCP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSCP1 
Mutations
ICGC Data PortalOSCP1 
TCGA Data PortalOSCP1 
Broad Tumor PortalOSCP1
OASIS PortalOSCP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSCP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSCP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OSCP1
DgiDB (Drug Gene Interaction Database)OSCP1
DoCM (Curated mutations)OSCP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSCP1 (select a term)
intoGenOSCP1
Cancer3DOSCP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608854   
Orphanet
MedgenOSCP1
Genetic Testing Registry OSCP1
NextProtQ8WVF1 [Medical]
TSGene127700
GENETestsOSCP1
Target ValidationOSCP1
Huge Navigator OSCP1 [HugePedia]
snp3D : Map Gene to Disease127700
BioCentury BCIQOSCP1
ClinGenOSCP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127700
Chemical/Pharm GKB GenePA165752125
Clinical trialOSCP1
Miscellaneous
canSAR (ICR)OSCP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSCP1
EVEXOSCP1
GoPubMedOSCP1
iHOPOSCP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:19 CEST 2017

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