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OSER1 (oxidative stress responsive serine-rich 1)

Identity

Alias_namesC20orf111
chromosome 20 open reading frame 111
oxidative stress responsive serine-rich 1
Alias_symbol (synonym)dJ1183I21.1
HSPC207
Perit1
Osr1
Other alias
HGNC (Hugo) OSER1
LocusID (NCBI) 51526
Atlas_Id 71558
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 42824581 and ends at 42839546 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
OSER1 (20q13.12) / OSER1 (20q13.12)OSER1 (20q13.12) / PDCD11 (10q24.33)PHYHIP (8p21.3) / OSER1 (20q13.12)
RABGAP1L (1q25.1) / OSER1 (20q13.12)SEC23A (14q21.1) / OSER1 (20q13.12)TM9SF4 (20q11.21) / OSER1 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSER1   16105
Cards
Entrez_Gene (NCBI)OSER1  51526  oxidative stress responsive serine-rich 1
AliasesC20orf111; HSPC207; Osr1; Perit1; 
dJ1183I21.1
GeneCards (Weizmann)OSER1
Ensembl hg19 (Hinxton)ENSG00000132823 [Gene_View]  chr20:42824581-42839546 [Contig_View]  OSER1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132823 [Gene_View]  chr20:42824581-42839546 [Contig_View]  OSER1 [Vega]
ICGC DataPortalENSG00000132823
TCGA cBioPortalOSER1
AceView (NCBI)OSER1
Genatlas (Paris)OSER1
WikiGenes51526
SOURCE (Princeton)OSER1
Genetics Home Reference (NIH)OSER1
Genomic and cartography
GoldenPath hg19 (UCSC)OSER1  -     chr20:42824581-42839546 -  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OSER1  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblOSER1 - 20q13.12 [CytoView hg19]  OSER1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIOSER1 [Mapview hg19]  OSER1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151041 AF161517 AF217514 AK000476 AK315155
RefSeq transcript (Entrez)NM_016470
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)OSER1
Cluster EST : UnigeneHs.75798 [ NCBI ]
CGAP (NCI)Hs.75798
Alternative Splicing GalleryENSG00000132823
Gene ExpressionOSER1 [ NCBI-GEO ]   OSER1 [ EBI - ARRAY_EXPRESS ]   OSER1 [ SEEK ]   OSER1 [ MEM ]
Gene Expression Viewer (FireBrowse)OSER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51526
GTEX Portal (Tissue expression)OSER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX31
Splice isoforms : SwissVarQ9NX31
PhosPhoSitePlusQ9NX31
Domains : Interpro (EBI)DUF776   
Domain families : Pfam (Sanger)DUF776 (PF05604)   
Domain families : Pfam (NCBI)pfam05604   
Conserved Domain (NCBI)OSER1
DMDM Disease mutations51526
Blocks (Seattle)OSER1
SuperfamilyQ9NX31
Human Protein AtlasENSG00000132823
Peptide AtlasQ9NX31
HPRD12739
IPIIPI00010197   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX31
IntAct (EBI)Q9NX31
FunCoupENSG00000132823
BioGRIDOSER1
STRING (EMBL)OSER1
ZODIACOSER1
Ontologies - Pathways
QuickGOQ9NX31
Ontology : AmiGOcellular response to hydrogen peroxide  
Ontology : EGO-EBIcellular response to hydrogen peroxide  
NDEx NetworkOSER1
Atlas of Cancer Signalling NetworkOSER1
Wikipedia pathwaysOSER1
Orthology - Evolution
OrthoDB51526
GeneTree (enSembl)ENSG00000132823
Phylogenetic Trees/Animal Genes : TreeFamOSER1
HOVERGENQ9NX31
HOGENOMQ9NX31
Homologs : HomoloGeneOSER1
Homology/Alignments : Family Browser (UCSC)OSER1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSER1
dbVarOSER1
ClinVarOSER1
1000_GenomesOSER1 
Exome Variant ServerOSER1
ExAC (Exome Aggregation Consortium)OSER1 (select the gene name)
Genetic variants : HAPMAP51526
Genomic Variants (DGV)OSER1 [DGVbeta]
DECIPHER (Syndromes)20:42824581-42839546  ENSG00000132823
CONAN: Copy Number AnalysisOSER1 
Mutations
ICGC Data PortalOSER1 
TCGA Data PortalOSER1 
Broad Tumor PortalOSER1
OASIS PortalOSER1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOSER1
BioMutasearch OSER1
DgiDB (Drug Gene Interaction Database)OSER1
DoCM (Curated mutations)OSER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSER1 (select a term)
intoGenOSER1
Cancer3DOSER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOSER1
Genetic Testing Registry OSER1
NextProtQ9NX31 [Medical]
TSGene51526
GENETestsOSER1
Huge Navigator OSER1 [HugePedia]
snp3D : Map Gene to Disease51526
BioCentury BCIQOSER1
ClinGenOSER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51526
Chemical/Pharm GKB GenePA25651
Clinical trialOSER1
Miscellaneous
canSAR (ICR)OSER1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSER1
EVEXOSER1
GoPubMedOSER1
iHOPOSER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:27 CET 2017

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