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OSGIN2 (oxidative stress induced growth inhibitor family member 2)

Identity

Alias_namesC8orf1
chromosome 8 open reading frame 1
Alias_symbol (synonym)hT41
Other alias
HGNC (Hugo) OSGIN2
LocusID (NCBI) 734
Atlas_Id 71563
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 89902534 and ends at 89927887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OSGIN2 (8q21.3) / RIPK2 (8q21.3)ROBO1 (3p12.3) / OSGIN2 (8q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSGIN2   1355
Cards
Entrez_Gene (NCBI)OSGIN2  734  oxidative stress induced growth inhibitor family member 2
AliasesC8orf1; hT41
GeneCards (Weizmann)OSGIN2
Ensembl hg19 (Hinxton)ENSG00000164823 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164823 [Gene_View]  chr8:89902534-89927887 [Contig_View]  OSGIN2 [Vega]
ICGC DataPortalENSG00000164823
TCGA cBioPortalOSGIN2
AceView (NCBI)OSGIN2
Genatlas (Paris)OSGIN2
WikiGenes734
SOURCE (Princeton)OSGIN2
Genetics Home Reference (NIH)OSGIN2
Genomic and cartography
GoldenPath hg38 (UCSC)OSGIN2  -     chr8:89902534-89927887 +  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSGIN2  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblOSGIN2 - 8q21.3 [CytoView hg19]  OSGIN2 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIOSGIN2 [Mapview hg19]  OSGIN2 [Mapview hg38]
OMIM604598   
Gene and transcription
Genbank (Entrez)AF061326 BC031054 BC156589 BM764021 BU688773
RefSeq transcript (Entrez)NM_001126111 NM_004337
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSGIN2
Cluster EST : UnigeneHs.436445 [ NCBI ]
CGAP (NCI)Hs.436445
Alternative Splicing GalleryENSG00000164823
Gene ExpressionOSGIN2 [ NCBI-GEO ]   OSGIN2 [ EBI - ARRAY_EXPRESS ]   OSGIN2 [ SEEK ]   OSGIN2 [ MEM ]
Gene Expression Viewer (FireBrowse)OSGIN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)734
GTEX Portal (Tissue expression)OSGIN2
Human Protein AtlasENSG00000164823-OSGIN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y236   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y236  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y236
Splice isoforms : SwissVarQ9Y236
PhosPhoSitePlusQ9Y236
Domains : Interpro (EBI)FAD/NAD-binding_dom    OKL38_fam    OSGIN2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OSGIN2
DMDM Disease mutations734
Blocks (Seattle)OSGIN2
SuperfamilyQ9Y236
Human Protein Atlas [tissue]ENSG00000164823-OSGIN2 [tissue]
Peptide AtlasQ9Y236
HPRD06853
IPIIPI00031737   IPI00798376   IPI00975571   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y236
IntAct (EBI)Q9Y236
FunCoupENSG00000164823
BioGRIDOSGIN2
STRING (EMBL)OSGIN2
ZODIACOSGIN2
Ontologies - Pathways
QuickGOQ9Y236
Ontology : AmiGOmolecular_function  cellular_component  growth factor activity  oxidoreductase activity  negative regulation of cell growth  meiotic cell cycle  oxidation-reduction process  
Ontology : EGO-EBImolecular_function  cellular_component  growth factor activity  oxidoreductase activity  negative regulation of cell growth  meiotic cell cycle  oxidation-reduction process  
NDEx NetworkOSGIN2
Atlas of Cancer Signalling NetworkOSGIN2
Wikipedia pathwaysOSGIN2
Orthology - Evolution
OrthoDB734
GeneTree (enSembl)ENSG00000164823
Phylogenetic Trees/Animal Genes : TreeFamOSGIN2
HOVERGENQ9Y236
HOGENOMQ9Y236
Homologs : HomoloGeneOSGIN2
Homology/Alignments : Family Browser (UCSC)OSGIN2
Gene fusions - Rearrangements
Fusion: Tumor Portal OSGIN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSGIN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSGIN2
dbVarOSGIN2
ClinVarOSGIN2
1000_GenomesOSGIN2 
Exome Variant ServerOSGIN2
ExAC (Exome Aggregation Consortium)ENSG00000164823
GNOMAD BrowserENSG00000164823
Genetic variants : HAPMAP734
Genomic Variants (DGV)OSGIN2 [DGVbeta]
DECIPHEROSGIN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSGIN2 
Mutations
ICGC Data PortalOSGIN2 
TCGA Data PortalOSGIN2 
Broad Tumor PortalOSGIN2
OASIS PortalOSGIN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSGIN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSGIN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OSGIN2
DgiDB (Drug Gene Interaction Database)OSGIN2
DoCM (Curated mutations)OSGIN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSGIN2 (select a term)
intoGenOSGIN2
Cancer3DOSGIN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604598   
Orphanet
MedgenOSGIN2
Genetic Testing Registry OSGIN2
NextProtQ9Y236 [Medical]
TSGene734
GENETestsOSGIN2
Target ValidationOSGIN2
Huge Navigator OSGIN2 [HugePedia]
snp3D : Map Gene to Disease734
BioCentury BCIQOSGIN2
ClinGenOSGIN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD734
Chemical/Pharm GKB GenePA162398506
Clinical trialOSGIN2
Miscellaneous
canSAR (ICR)OSGIN2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSGIN2
EVEXOSGIN2
GoPubMedOSGIN2
iHOPOSGIN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:26 CET 2017

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