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OSR1 (odd-skipped related transcription factor 1)

Identity

Alias (NCBI)ODD
HGNC (Hugo) OSR1
HGNC Previous nameODD
HGNC Previous nameodd-skipped (Drosophila) homolog
 odd-skipped related 1 (Drosophila)
LocusID (NCBI) 130497
Atlas_Id 43391
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 19351485 and ends at 19358623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OSR1   8111
Cards
Entrez_Gene (NCBI)OSR1    odd-skipped related transcription factor 1
AliasesODD
GeneCards (Weizmann)OSR1
Ensembl hg19 (Hinxton)ENSG00000143867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143867 [Gene_View]  ENSG00000143867 [Sequence]  chr2:19351485-19358623 [Contig_View]  OSR1 [Vega]
ICGC DataPortalENSG00000143867
TCGA cBioPortalOSR1
AceView (NCBI)OSR1
Genatlas (Paris)OSR1
SOURCE (Princeton)OSR1
Genetics Home Reference (NIH)OSR1
Genomic and cartography
GoldenPath hg38 (UCSC)OSR1  -     chr2:19351485-19358623 -  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSR1  -     2p24.1   [Description]    (hg19-Feb_2009)
GoldenPathOSR1 - 2p24.1 [CytoView hg19]  OSR1 - 2p24.1 [CytoView hg38]
ImmunoBaseENSG00000143867
Genome Data Viewer NCBIOSR1 [Mapview hg19]  
OMIM608891   
Gene and transcription
Genbank (Entrez)AB082568 AI391506 AK074591 AK122756 BC025712
RefSeq transcript (Entrez)NM_145260
Consensus coding sequences : CCDS (NCBI)OSR1
Gene ExpressionOSR1 [ NCBI-GEO ]   OSR1 [ EBI - ARRAY_EXPRESS ]   OSR1 [ SEEK ]   OSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)OSR1 [ Firebrowse - Broad ]
GenevisibleExpression of OSR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130497
GTEX Portal (Tissue expression)OSR1
Human Protein AtlasENSG00000143867-OSR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAX0
PhosPhoSitePlusQ8TAX0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)OSR1
SuperfamilyQ8TAX0
AlphaFold pdb e-kbQ8TAX0   
Human Protein Atlas [tissue]ENSG00000143867-OSR1 [tissue]
HPRD16401
Protein Interaction databases
DIP (DOE-UCLA)Q8TAX0
IntAct (EBI)Q8TAX0
BioGRIDOSR1
STRING (EMBL)OSR1
ZODIACOSR1
Ontologies - Pathways
QuickGOQ8TAX0
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  chromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  urogenital system development  urogenital system development  ureteric bud development  mesonephros development  chondrocyte differentiation  nucleus  nucleus  cytosol  regulation of transcription by RNA polymerase II  heart development  gonad development  embryo development  positive regulation of gene expression  extrinsic component of membrane  cell differentiation  positive regulation of bone mineralization  negative regulation of epithelial cell differentiation  embryonic forelimb morphogenesis  embryonic hindlimb morphogenesis  embryonic skeletal limb joint morphogenesis  middle ear morphogenesis  odontogenesis  embryonic digit morphogenesis  negative regulation of apoptotic process  positive regulation of transcription by RNA polymerase II  metal ion binding  intermediate mesoderm development  pronephros development  stem cell differentiation  positive regulation of epithelial cell proliferation  roof of mouth development  embryonic skeletal joint morphogenesis  cellular response to retinoic acid  metanephric mesenchyme development  cell proliferation involved in kidney development  metanephric mesenchyme morphogenesis  mesangial cell development  metanephric mesenchymal cell differentiation  posterior mesonephric tubule development  specification of anterior mesonephric tubule identity  specification of posterior mesonephric tubule identity  mesonephric duct morphogenesis  negative regulation of nephron tubule epithelial cell differentiation  renal vesicle progenitor cell differentiation  ureter urothelium development  metanephric epithelium development  metanephric smooth muscle tissue development  metanephric nephron tubule development  metanephric glomerulus vasculature development  metanephric interstitial fibroblast development  pattern specification involved in metanephros development  embryonic skeletal joint development  metanephric cap mesenchymal cell proliferation involved in metanephros development  negative regulation of creatine transmembrane transporter activity  sequence-specific double-stranded DNA binding  positive regulation of gastrulation  negative regulation of sodium ion transmembrane transporter activity  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  chromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  urogenital system development  urogenital system development  ureteric bud development  mesonephros development  chondrocyte differentiation  nucleus  nucleus  cytosol  regulation of transcription by RNA polymerase II  heart development  gonad development  embryo development  positive regulation of gene expression  extrinsic component of membrane  cell differentiation  positive regulation of bone mineralization  negative regulation of epithelial cell differentiation  embryonic forelimb morphogenesis  embryonic hindlimb morphogenesis  embryonic skeletal limb joint morphogenesis  middle ear morphogenesis  odontogenesis  embryonic digit morphogenesis  negative regulation of apoptotic process  positive regulation of transcription by RNA polymerase II  metal ion binding  intermediate mesoderm development  pronephros development  stem cell differentiation  positive regulation of epithelial cell proliferation  roof of mouth development  embryonic skeletal joint morphogenesis  cellular response to retinoic acid  metanephric mesenchyme development  cell proliferation involved in kidney development  metanephric mesenchyme morphogenesis  mesangial cell development  metanephric mesenchymal cell differentiation  posterior mesonephric tubule development  specification of anterior mesonephric tubule identity  specification of posterior mesonephric tubule identity  mesonephric duct morphogenesis  negative regulation of nephron tubule epithelial cell differentiation  renal vesicle progenitor cell differentiation  ureter urothelium development  metanephric epithelium development  metanephric smooth muscle tissue development  metanephric nephron tubule development  metanephric glomerulus vasculature development  metanephric interstitial fibroblast development  pattern specification involved in metanephros development  embryonic skeletal joint development  metanephric cap mesenchymal cell proliferation involved in metanephros development  negative regulation of creatine transmembrane transporter activity  sequence-specific double-stranded DNA binding  positive regulation of gastrulation  negative regulation of sodium ion transmembrane transporter activity  
NDEx NetworkOSR1
Atlas of Cancer Signalling NetworkOSR1
Wikipedia pathwaysOSR1
Orthology - Evolution
OrthoDB130497
GeneTree (enSembl)ENSG00000143867
Phylogenetic Trees/Animal Genes : TreeFamOSR1
Homologs : HomoloGeneOSR1
Homology/Alignments : Family Browser (UCSC)OSR1
Gene fusions - Rearrangements
Fusion : QuiverOSR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSR1
dbVarOSR1
ClinVarOSR1
MonarchOSR1
1000_GenomesOSR1 
Exome Variant ServerOSR1
GNOMAD BrowserENSG00000143867
Varsome BrowserOSR1
ACMGOSR1 variants
VarityQ8TAX0
Genomic Variants (DGV)OSR1 [DGVbeta]
DECIPHEROSR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSR1 
Mutations
ICGC Data PortalOSR1 
TCGA Data PortalOSR1 
Broad Tumor PortalOSR1
OASIS PortalOSR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOSR1
Mutations and Diseases : HGMDOSR1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOSR1
DgiDB (Drug Gene Interaction Database)OSR1
DoCM (Curated mutations)OSR1
CIViC (Clinical Interpretations of Variants in Cancer)OSR1
Cancer3DOSR1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608891   
Orphanet
DisGeNETOSR1
MedgenOSR1
Genetic Testing Registry OSR1
NextProtQ8TAX0 [Medical]
GENETestsOSR1
Target ValidationOSR1
Huge Navigator OSR1 [HugePedia]
ClinGenOSR1
Clinical trials, drugs, therapy
MyCancerGenomeOSR1
Protein Interactions : CTDOSR1
Pharm GKB GenePA164742217
PharosQ8TAX0
Clinical trialOSR1
Miscellaneous
canSAR (ICR)OSR1
HarmonizomeOSR1
DataMed IndexOSR1
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOSR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:23:55 CEST 2021

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