Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OSR1 (odd-skipped related transciption factor 1)

Identity

Alias_namesODD
odd-skipped (Drosophila) homolog
odd-skipped related 1 (Drosophila)
Other alias
HGNC (Hugo) OSR1
LocusID (NCBI) 130497
Atlas_Id 43391
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 19551246 and ends at 19558372 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSR1   8111
Cards
Entrez_Gene (NCBI)OSR1  130497  odd-skipped related transciption factor 1
AliasesODD
GeneCards (Weizmann)OSR1
Ensembl hg19 (Hinxton)ENSG00000143867 [Gene_View]  chr2:19551246-19558372 [Contig_View]  OSR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143867 [Gene_View]  chr2:19551246-19558372 [Contig_View]  OSR1 [Vega]
ICGC DataPortalENSG00000143867
TCGA cBioPortalOSR1
AceView (NCBI)OSR1
Genatlas (Paris)OSR1
WikiGenes130497
SOURCE (Princeton)OSR1
Genetics Home Reference (NIH)OSR1
Genomic and cartography
GoldenPath hg19 (UCSC)OSR1  -     chr2:19551246-19558372 -  2p24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OSR1  -     2p24.1   [Description]    (hg38-Dec_2013)
EnsemblOSR1 - 2p24.1 [CytoView hg19]  OSR1 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBIOSR1 [Mapview hg19]  OSR1 [Mapview hg38]
OMIM608891   
Gene and transcription
Genbank (Entrez)AB082568 AI391506 AK074591 AK122756 AM393368
RefSeq transcript (Entrez)NM_145260
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929299
Consensus coding sequences : CCDS (NCBI)OSR1
Cluster EST : UnigeneHs.123933 [ NCBI ]
CGAP (NCI)Hs.123933
Alternative Splicing GalleryENSG00000143867
Gene ExpressionOSR1 [ NCBI-GEO ]   OSR1 [ EBI - ARRAY_EXPRESS ]   OSR1 [ SEEK ]   OSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)OSR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130497
GTEX Portal (Tissue expression)OSR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAX0
Splice isoforms : SwissVarQ8TAX0
PhosPhoSitePlusQ8TAX0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)OSR1
DMDM Disease mutations130497
Blocks (Seattle)OSR1
SuperfamilyQ8TAX0
Human Protein AtlasENSG00000143867
Peptide AtlasQ8TAX0
HPRD16401
IPIIPI00152145   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAX0
IntAct (EBI)Q8TAX0
FunCoupENSG00000143867
BioGRIDOSR1
STRING (EMBL)OSR1
ZODIACOSR1
Ontologies - Pathways
QuickGOQ8TAX0
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  urogenital system development  ureteric bud development  mesonephros development  chondrocyte differentiation  nucleic acid binding  nucleus  transcription, DNA-templated  heart development  gonad development  positive regulation of gene expression  cell differentiation  positive regulation of bone mineralization  negative regulation of epithelial cell differentiation  embryonic forelimb morphogenesis  embryonic hindlimb morphogenesis  embryonic skeletal limb joint morphogenesis  middle ear morphogenesis  odontogenesis  embryonic digit morphogenesis  negative regulation of apoptotic process  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  intermediate mesoderm development  pronephros development  stem cell differentiation  positive regulation of epithelial cell proliferation  palate development  embryonic skeletal joint morphogenesis  cellular response to retinoic acid  metanephric mesenchyme development  cell proliferation involved in kidney development  metanephric mesenchyme morphogenesis  mesangial cell development  metanephric mesenchymal cell differentiation  posterior mesonephric tubule development  specification of anterior mesonephric tubule identity  specification of posterior mesonephric tubule identity  mesonephric duct morphogenesis  negative regulation of nephron tubule epithelial cell differentiation  renal vesicle progenitor cell differentiation  ureter urothelium development  metanephric epithelium development  metanephric smooth muscle tissue development  metanephric nephron tubule development  metanephric glomerulus vasculature development  metanephric interstitial fibroblast development  pattern specification involved in metanephros development  embryonic skeletal joint development  metanephric cap mesenchymal cell proliferation involved in metanephros development  positive regulation of gastrulation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  urogenital system development  ureteric bud development  mesonephros development  chondrocyte differentiation  nucleic acid binding  nucleus  transcription, DNA-templated  heart development  gonad development  positive regulation of gene expression  cell differentiation  positive regulation of bone mineralization  negative regulation of epithelial cell differentiation  embryonic forelimb morphogenesis  embryonic hindlimb morphogenesis  embryonic skeletal limb joint morphogenesis  middle ear morphogenesis  odontogenesis  embryonic digit morphogenesis  negative regulation of apoptotic process  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  intermediate mesoderm development  pronephros development  stem cell differentiation  positive regulation of epithelial cell proliferation  palate development  embryonic skeletal joint morphogenesis  cellular response to retinoic acid  metanephric mesenchyme development  cell proliferation involved in kidney development  metanephric mesenchyme morphogenesis  mesangial cell development  metanephric mesenchymal cell differentiation  posterior mesonephric tubule development  specification of anterior mesonephric tubule identity  specification of posterior mesonephric tubule identity  mesonephric duct morphogenesis  negative regulation of nephron tubule epithelial cell differentiation  renal vesicle progenitor cell differentiation  ureter urothelium development  metanephric epithelium development  metanephric smooth muscle tissue development  metanephric nephron tubule development  metanephric glomerulus vasculature development  metanephric interstitial fibroblast development  pattern specification involved in metanephros development  embryonic skeletal joint development  metanephric cap mesenchymal cell proliferation involved in metanephros development  positive regulation of gastrulation  
NDEx NetworkOSR1
Atlas of Cancer Signalling NetworkOSR1
Wikipedia pathwaysOSR1
Orthology - Evolution
OrthoDB130497
GeneTree (enSembl)ENSG00000143867
Phylogenetic Trees/Animal Genes : TreeFamOSR1
HOVERGENQ8TAX0
HOGENOMQ8TAX0
Homologs : HomoloGeneOSR1
Homology/Alignments : Family Browser (UCSC)OSR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSR1
dbVarOSR1
ClinVarOSR1
1000_GenomesOSR1 
Exome Variant ServerOSR1
ExAC (Exome Aggregation Consortium)OSR1 (select the gene name)
Genetic variants : HAPMAP130497
Genomic Variants (DGV)OSR1 [DGVbeta]
DECIPHER (Syndromes)2:19551246-19558372  ENSG00000143867
CONAN: Copy Number AnalysisOSR1 
Mutations
ICGC Data PortalOSR1 
TCGA Data PortalOSR1 
Broad Tumor PortalOSR1
OASIS PortalOSR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OSR1
DgiDB (Drug Gene Interaction Database)OSR1
DoCM (Curated mutations)OSR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSR1 (select a term)
intoGenOSR1
Cancer3DOSR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608891   
Orphanet
MedgenOSR1
Genetic Testing Registry OSR1
NextProtQ8TAX0 [Medical]
TSGene130497
GENETestsOSR1
Huge Navigator OSR1 [HugePedia]
snp3D : Map Gene to Disease130497
BioCentury BCIQOSR1
ClinGenOSR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130497
Chemical/Pharm GKB GenePA164742217
Clinical trialOSR1
Miscellaneous
canSAR (ICR)OSR1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSR1
EVEXOSR1
GoPubMedOSR1
iHOPOSR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:19:58 CET 2017

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