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OST4 (oligosaccharyltransferase complex subunit 4, non-catalytic)

Identity

Alias_namesoligosaccharyltransferase 4 homolog (S. cerevisiae)
oligosaccharyltransferase complex subunit 4 (non-catalytic)
Other alias-
HGNC (Hugo) OST4
LocusID (NCBI) 100128731
Atlas_Id 71566
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27070474 and ends at 27071699 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / OST4 (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OST4   32483
Cards
Entrez_Gene (NCBI)OST4  100128731  oligosaccharyltransferase complex subunit 4, non-catalytic
Aliases
GeneCards (Weizmann)OST4
Ensembl hg19 (Hinxton)ENSG00000228474 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228474 [Gene_View]  chr2:27070474-27071699 [Contig_View]  OST4 [Vega]
ICGC DataPortalENSG00000228474
TCGA cBioPortalOST4
AceView (NCBI)OST4
Genatlas (Paris)OST4
WikiGenes100128731
SOURCE (Princeton)OST4
Genetics Home Reference (NIH)OST4
Genomic and cartography
GoldenPath hg38 (UCSC)OST4  -     chr2:27070474-27071699 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OST4  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblOST4 - 2p23.3 [CytoView hg19]  OST4 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIOST4 [Mapview hg19]  OST4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA772256 AL049447 BC105283 BF697310
RefSeq transcript (Entrez)NM_001134693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OST4
Cluster EST : UnigeneHs.502948 [ NCBI ]
CGAP (NCI)Hs.502948
Alternative Splicing GalleryENSG00000228474
Gene ExpressionOST4 [ NCBI-GEO ]   OST4 [ EBI - ARRAY_EXPRESS ]   OST4 [ SEEK ]   OST4 [ MEM ]
Gene Expression Viewer (FireBrowse)OST4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128731
GTEX Portal (Tissue expression)OST4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C6T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C6T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C6T2
Splice isoforms : SwissVarP0C6T2
PhosPhoSitePlusP0C6T2
Domains : Interpro (EBI)Oligosaccaryltransferase   
Domain families : Pfam (Sanger)Ost4 (PF10215)   
Domain families : Pfam (NCBI)pfam10215   
Conserved Domain (NCBI)OST4
DMDM Disease mutations100128731
Blocks (Seattle)OST4
PDB (SRS)2LAT   
PDB (PDBSum)2LAT   
PDB (IMB)2LAT   
PDB (RSDB)2LAT   
Structural Biology KnowledgeBase2LAT   
SCOP (Structural Classification of Proteins)2LAT   
CATH (Classification of proteins structures)2LAT   
SuperfamilyP0C6T2
Human Protein AtlasENSG00000228474
Peptide AtlasP0C6T2
IPIIPI00913953   
Protein Interaction databases
DIP (DOE-UCLA)P0C6T2
IntAct (EBI)P0C6T2
FunCoupENSG00000228474
BioGRIDOST4
STRING (EMBL)OST4
ZODIACOST4
Ontologies - Pathways
QuickGOP0C6T2
Ontology : AmiGOoligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via asparagine  
Ontology : EGO-EBIoligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via asparagine  
NDEx NetworkOST4
Atlas of Cancer Signalling NetworkOST4
Wikipedia pathwaysOST4
Orthology - Evolution
OrthoDB100128731
GeneTree (enSembl)ENSG00000228474
Phylogenetic Trees/Animal Genes : TreeFamOST4
HOVERGENP0C6T2
HOGENOMP0C6T2
Homologs : HomoloGeneOST4
Homology/Alignments : Family Browser (UCSC)OST4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOST4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OST4
dbVarOST4
ClinVarOST4
1000_GenomesOST4 
Exome Variant ServerOST4
ExAC (Exome Aggregation Consortium)OST4 (select the gene name)
Genetic variants : HAPMAP100128731
Genomic Variants (DGV)OST4 [DGVbeta]
DECIPHEROST4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOST4 
Mutations
ICGC Data PortalOST4 
TCGA Data PortalOST4 
Broad Tumor PortalOST4
OASIS PortalOST4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOST4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOST4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OST4
DgiDB (Drug Gene Interaction Database)OST4
DoCM (Curated mutations)OST4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OST4 (select a term)
intoGenOST4
Cancer3DOST4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOST4
Genetic Testing Registry OST4
NextProtP0C6T2 [Medical]
TSGene100128731
GENETestsOST4
Target ValidationOST4
Huge Navigator OST4 [HugePedia]
snp3D : Map Gene to Disease100128731
BioCentury BCIQOST4
ClinGenOST4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128731
Chemical/Pharm GKB GenePA165697090
Clinical trialOST4
Miscellaneous
canSAR (ICR)OST4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOST4
EVEXOST4
GoPubMedOST4
iHOPOST4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:35:14 CEST 2017

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