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OSTC (oligosaccharyltransferase complex subunit (non-catalytic))

Identity

Alias_namesoligosaccharyltransferase complex subunit
Alias_symbol (synonym)DC2
Other alias
HGNC (Hugo) OSTC
LocusID (NCBI) 58505
Atlas_Id 40268
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 109571741 and ends at 109588978 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
OSTC (4q25) / DDOST (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSTC   24448
Cards
Entrez_Gene (NCBI)OSTC  58505  oligosaccharyltransferase complex subunit (non-catalytic)
AliasesDC2
GeneCards (Weizmann)OSTC
Ensembl hg19 (Hinxton)ENSG00000198856 [Gene_View]  chr4:109571741-109588978 [Contig_View]  OSTC [Vega]
Ensembl hg38 (Hinxton)ENSG00000198856 [Gene_View]  chr4:109571741-109588978 [Contig_View]  OSTC [Vega]
ICGC DataPortalENSG00000198856
TCGA cBioPortalOSTC
AceView (NCBI)OSTC
Genatlas (Paris)OSTC
WikiGenes58505
SOURCE (Princeton)OSTC
Genetics Home Reference (NIH)OSTC
Genomic and cartography
GoldenPath hg19 (UCSC)OSTC  -     chr4:109571741-109588978 +  4q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OSTC  -     4q25   [Description]    (hg38-Dec_2013)
EnsemblOSTC - 4q25 [CytoView hg19]  OSTC - 4q25 [CytoView hg38]
Mapping of homologs : NCBIOSTC [Mapview hg19]  OSTC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF068297 AF161425 AF201937 AF343342 AK312185
RefSeq transcript (Entrez)NM_001267817 NM_001267818 NM_021227
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)OSTC
Cluster EST : UnigeneHs.445803 [ NCBI ]
CGAP (NCI)Hs.445803
Alternative Splicing GalleryENSG00000198856
Gene ExpressionOSTC [ NCBI-GEO ]   OSTC [ EBI - ARRAY_EXPRESS ]   OSTC [ SEEK ]   OSTC [ MEM ]
Gene Expression Viewer (FireBrowse)OSTC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58505
GTEX Portal (Tissue expression)OSTC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRP0
Splice isoforms : SwissVarQ9NRP0
PhosPhoSitePlusQ9NRP0
Domains : Interpro (EBI)OligosaccharylTrfase_OST3/OST6   
Domain families : Pfam (Sanger)OST3_OST6 (PF04756)   
Domain families : Pfam (NCBI)pfam04756   
Conserved Domain (NCBI)OSTC
DMDM Disease mutations58505
Blocks (Seattle)OSTC
SuperfamilyQ9NRP0
Human Protein AtlasENSG00000198856
Peptide AtlasQ9NRP0
HPRD13120
IPIIPI00183603   IPI00038550   IPI00968228   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRP0
IntAct (EBI)Q9NRP0
FunCoupENSG00000198856
BioGRIDOSTC
STRING (EMBL)OSTC
ZODIACOSTC
Ontologies - Pathways
QuickGOQ9NRP0
Ontology : AmiGOdolichyl-diphosphooligosaccharide-protein glycotransferase activity  protein binding  oligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via asparagine  
Ontology : EGO-EBIdolichyl-diphosphooligosaccharide-protein glycotransferase activity  protein binding  oligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via asparagine  
NDEx NetworkOSTC
Atlas of Cancer Signalling NetworkOSTC
Wikipedia pathwaysOSTC
Orthology - Evolution
OrthoDB58505
GeneTree (enSembl)ENSG00000198856
Phylogenetic Trees/Animal Genes : TreeFamOSTC
HOVERGENQ9NRP0
HOGENOMQ9NRP0
Homologs : HomoloGeneOSTC
Homology/Alignments : Family Browser (UCSC)OSTC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSTC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSTC
dbVarOSTC
ClinVarOSTC
1000_GenomesOSTC 
Exome Variant ServerOSTC
ExAC (Exome Aggregation Consortium)OSTC (select the gene name)
Genetic variants : HAPMAP58505
Genomic Variants (DGV)OSTC [DGVbeta]
DECIPHER (Syndromes)4:109571741-109588978  ENSG00000198856
CONAN: Copy Number AnalysisOSTC 
Mutations
ICGC Data PortalOSTC 
TCGA Data PortalOSTC 
Broad Tumor PortalOSTC
OASIS PortalOSTC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSTC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOSTC
BioMutasearch OSTC
DgiDB (Drug Gene Interaction Database)OSTC
DoCM (Curated mutations)OSTC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSTC (select a term)
intoGenOSTC
Cancer3DOSTC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOSTC
Genetic Testing Registry OSTC
NextProtQ9NRP0 [Medical]
TSGene58505
GENETestsOSTC
Huge Navigator OSTC [HugePedia]
snp3D : Map Gene to Disease58505
BioCentury BCIQOSTC
ClinGenOSTC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58505
Chemical/Pharm GKB GenePA164724280
Clinical trialOSTC
Miscellaneous
canSAR (ICR)OSTC (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSTC
EVEXOSTC
GoPubMedOSTC
iHOPOSTC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:19:59 CET 2017

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