Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OSTCP1 (oligosaccharyltransferase complex subunit pseudogene 1)

Identity

Alias_namesOSTCL
oligosaccharyltransferase complex subunit-like
Alias_symbol (synonym)DC2L
Other alias
HGNC (Hugo) OSTCP1
LocusID (NCBI) 202459
Atlas_Id 71567
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 158841126 and ends at 158857632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSTCP1   30530
Cards
Entrez_Gene (NCBI)OSTCP1  202459  oligosaccharyltransferase complex subunit pseudogene 1
AliasesDC2L; OSTCL
GeneCards (Weizmann)OSTCP1
Ensembl hg19 (Hinxton)ENSG00000243775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243775 [Gene_View]  ENSG00000243775 [Sequence]  chr6:158841126-158857632 [Contig_View]  OSTCP1 [Vega]
ICGC DataPortalENSG00000243775
TCGA cBioPortalOSTCP1
AceView (NCBI)OSTCP1
Genatlas (Paris)OSTCP1
WikiGenes202459
SOURCE (Princeton)OSTCP1
Genetics Home Reference (NIH)OSTCP1
Genomic and cartography
GoldenPath hg38 (UCSC)OSTCP1  -     chr6:158841126-158857632 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSTCP1  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblOSTCP1 - 6q25.3 [CytoView hg19]  OSTCP1 - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBIOSTCP1 [Mapview hg19]  OSTCP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC024224 HQ447769
RefSeq transcript (Entrez)NM_145303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSTCP1
Cluster EST : UnigeneHs.487035 [ NCBI ]
CGAP (NCI)Hs.487035
Alternative Splicing GalleryENSG00000243775
Gene ExpressionOSTCP1 [ NCBI-GEO ]   OSTCP1 [ EBI - ARRAY_EXPRESS ]   OSTCP1 [ SEEK ]   OSTCP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OSTCP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)202459
GTEX Portal (Tissue expression)OSTCP1
Human Protein AtlasENSG00000243775-OSTCP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OSTCP1
DMDM Disease mutations202459
Blocks (Seattle)OSTCP1
Human Protein Atlas [tissue]ENSG00000243775-OSTCP1 [tissue]
HPRD14130
Protein Interaction databases
FunCoupENSG00000243775
BioGRIDOSTCP1
STRING (EMBL)OSTCP1
ZODIACOSTCP1
Ontologies - Pathways
Huge Navigator OSTCP1 [HugePedia]
snp3D : Map Gene to Disease202459
BioCentury BCIQOSTCP1
ClinGenOSTCP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202459
Chemical/Pharm GKB GenePA164724293
Clinical trialOSTCP1
Miscellaneous
canSAR (ICR)OSTCP1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSTCP1
EVEXOSTCP1
GoPubMedOSTCP1
iHOPOSTCP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:22:43 CEST 2018

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