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OSTM1-AS1 (OSTM1 antisense RNA 1)

Identity

Alias_namesOSTM1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) OSTM1-AS1
LocusID (NCBI) 100287366
Atlas_Id 71570
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 108123633 and ends at 108159395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OSTM1-AS1   43666
Cards
Entrez_Gene (NCBI)OSTM1-AS1  100287366  OSTM1 antisense RNA 1
Aliases
GeneCards (Weizmann)OSTM1-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:108123633-108159395 [Contig_View]  OSTM1-AS1 [Vega]
TCGA cBioPortalOSTM1-AS1
AceView (NCBI)OSTM1-AS1
Genatlas (Paris)OSTM1-AS1
WikiGenes100287366
SOURCE (Princeton)OSTM1-AS1
Genetics Home Reference (NIH)OSTM1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)OSTM1-AS1  -     chr6:108123633-108159395 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSTM1-AS1  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblOSTM1-AS1 - 6q21 [CytoView hg19]  OSTM1-AS1 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIOSTM1-AS1 [Mapview hg19]  OSTM1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA017368 AF520419 BC031282 BM671761
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSTM1-AS1
Cluster EST : UnigeneHs.221513 [ NCBI ]
CGAP (NCI)Hs.221513
Gene ExpressionOSTM1-AS1 [ NCBI-GEO ]   OSTM1-AS1 [ EBI - ARRAY_EXPRESS ]   OSTM1-AS1 [ SEEK ]   OSTM1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)OSTM1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100287366
GTEX Portal (Tissue expression)OSTM1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OSTM1-AS1
DMDM Disease mutations100287366
Blocks (Seattle)OSTM1-AS1
IPIIPI00980455   
Protein Interaction databases
BioGRIDOSTM1-AS1
STRING (EMBL)OSTM1-AS1
ZODIACOSTM1-AS1
Ontologies - Pathways
Huge Navigator OSTM1-AS1 [HugePedia]
snp3D : Map Gene to Disease100287366
BioCentury BCIQOSTM1-AS1
ClinGenOSTM1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287366
Clinical trialOSTM1-AS1
Miscellaneous
canSAR (ICR)OSTM1-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSTM1-AS1
EVEXOSTM1-AS1
GoPubMedOSTM1-AS1
iHOPOSTM1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:22:43 CEST 2018

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