Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OTC (ornithine carbamoyltransferase)

Identity

Other namesOCTD
HGNC (Hugo) OTC
LocusID (NCBI) 5009
Location Xp11.4
Location_base_pair Starts at 38211736 and ends at 38280703 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OTC   8512
Cards
Entrez_Gene (NCBI)OTC  5009  ornithine carbamoyltransferase
GeneCards (Weizmann)OTC
Ensembl (Hinxton)ENSG00000036473 [Gene_View]  chrX:38211736-38280703 [Contig_View]  OTC [Vega]
ICGC DataPortalENSG00000036473
AceView (NCBI)OTC
Genatlas (Paris)OTC
WikiGenes5009
SOURCE (Princeton)NM_000531
Genomic and cartography
GoldenPath (UCSC)OTC  -  Xp11.4   chrX:38211736-38280703 +  Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblOTC - Xp11.4 [CytoView]
Mapping of homologs : NCBIOTC [Mapview]
OMIM300461   311250   
Gene and transcription
Genbank (Entrez)AI247721 AK292757 BC074745 BC107153 BC107154
RefSeq transcript (Entrez)NM_000531
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_008471 NT_079573 NW_001842361 NW_004929439
Consensus coding sequences : CCDS (NCBI)OTC
Cluster EST : UnigeneHs.117050 [ NCBI ]
CGAP (NCI)Hs.117050
Alternative Splicing : Fast-db (Paris)GSHG0031460
Alternative Splicing GalleryENSG00000036473
Gene ExpressionOTC [ NCBI-GEO ]     OTC [ SEEK ]   OTC [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00480 (Uniprot)
NextProtP00480  [Medical]
With graphics : InterProP00480
Splice isoforms : SwissVarP00480 (Swissvar)
Catalytic activity : Enzyme2.1.3.3 [ Enzyme-Expasy ]   2.1.3.32.1.3.3 [ IntEnz-EBI ]   2.1.3.3 [ BRENDA ]   2.1.3.3 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)CARBAMOYLTRANSFERASE (PS00097)   
Domains : Interpro (EBI)Asp/Orn_carbamoyltranf_P-bd    Asp/Orn_carbamoylTrfase    Asp_carbamoyltransf_Asp/Orn-bd    Orn/put_carbamltrans   
Related proteins : CluSTrP00480
Domain families : Pfam (Sanger)OTCace (PF00185)    OTCace_N (PF02729)   
Domain families : Pfam (NCBI)pfam00185    pfam02729   
DMDM Disease mutations5009
Blocks (Seattle)P00480
PDB (SRS)1C9Y    1EP9    1FVO    1OTH   
PDB (PDBSum)1C9Y    1EP9    1FVO    1OTH   
PDB (IMB)1C9Y    1EP9    1FVO    1OTH   
PDB (RSDB)1C9Y    1EP9    1FVO    1OTH   
Human Protein AtlasENSG00000036473
Peptide AtlasP00480
HPRD02408
IPIIPI00295363   
Protein Interaction databases
DIP (DOE-UCLA)P00480
IntAct (EBI)P00480
FunCoupENSG00000036473
BioGRIDOTC
InParanoidP00480
Interologous Interaction database P00480
IntegromeDBOTC
STRING (EMBL)OTC
Ontologies - Pathways
Ontology : AmiGOurea cycle  urea cycle  urea cycle  liver development  ornithine carbamoyltransferase activity  ornithine carbamoyltransferase activity  phospholipid binding  mitochondrion  mitochondrial inner membrane  mitochondrial matrix  mitochondrial matrix  arginine biosynthetic process  ornithine catabolic process  midgut development  response to zinc ion  amino acid binding  citrulline biosynthetic process  response to insulin  cellular nitrogen compound metabolic process  phosphate ion binding  response to drug  small molecule metabolic process  protein homotrimerization  response to biotin  ammonia homeostasis  
Ontology : EGO-EBIurea cycle  urea cycle  urea cycle  liver development  ornithine carbamoyltransferase activity  ornithine carbamoyltransferase activity  phospholipid binding  mitochondrion  mitochondrial inner membrane  mitochondrial matrix  mitochondrial matrix  arginine biosynthetic process  ornithine catabolic process  midgut development  response to zinc ion  amino acid binding  citrulline biosynthetic process  response to insulin  cellular nitrogen compound metabolic process  phosphate ion binding  response to drug  small molecule metabolic process  protein homotrimerization  response to biotin  ammonia homeostasis  
Pathways : KEGGArginine and proline metabolism   
Protein Interaction DatabaseOTC
Wikipedia pathwaysOTC
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)OTC
SNP (GeneSNP Utah)OTC
SNP : HGBaseOTC
Genetic variants : HAPMAPOTC
1000_GenomesOTC 
ICGC programENSG00000036473 
CONAN: Copy Number AnalysisOTC 
Somatic Mutations in Cancer : COSMICOTC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Mutations and Diseases : HGMDOTC
OMIM300461    311250   
MedgenOTC
GENETestsOTC
Disease Genetic AssociationOTC
Huge Navigator OTC [HugePedia]  OTC [HugeCancerGEM]
Genomic VariantsOTC  OTC [DGVbeta]
Exome VariantOTC
dbVarOTC
ClinVarOTC
snp3D : Map Gene to Disease5009
General knowledge
Homologs : HomoloGeneOTC
Homology/Alignments : Family Browser (UCSC)OTC
Phylogenetic Trees/Animal Genes : TreeFamOTC
Chemical/Protein Interactions : CTD5009
Chemical/Pharm GKB GenePA32840
Clinical trialOTC
Cancer Resource (Charite)ENSG00000036473
Other databases
Probes
Litterature
PubMed93 Pubmed reference(s) in Entrez
CoreMineOTC
iHOPOTC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:06:14 CEST 2014

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