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OTOG (otogelin)

Identity

Alias_symbol (synonym)mlemp
OTGN
FLJ46346
Other aliasDFNB18B
MLEMP
HGNC (Hugo) OTOG
LocusID (NCBI) 340990
Atlas_Id 71574
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 17547373 and ends at 17645944 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTOG   8516
Cards
Entrez_Gene (NCBI)OTOG  340990  otogelin
AliasesDFNB18B; MLEMP; OTGN
GeneCards (Weizmann)OTOG
Ensembl hg19 (Hinxton)ENSG00000188162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188162 [Gene_View]  chr11:17547373-17645944 [Contig_View]  OTOG [Vega]
ICGC DataPortalENSG00000188162
TCGA cBioPortalOTOG
AceView (NCBI)OTOG
Genatlas (Paris)OTOG
WikiGenes340990
SOURCE (Princeton)OTOG
Genetics Home Reference (NIH)OTOG
Genomic and cartography
GoldenPath hg38 (UCSC)OTOG  -     chr11:17547373-17645944 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTOG  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblOTOG - 11p15.1 [CytoView hg19]  OTOG - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBIOTOG [Mapview hg19]  OTOG [Mapview hg38]
OMIM604487   614945   
Gene and transcription
Genbank (Entrez)AK128214 DB081210 DB096404 DB341780 DV080216
RefSeq transcript (Entrez)NM_001277269 NM_001292063 NM_198497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTOG
Cluster EST : UnigeneHs.688380 [ NCBI ]
CGAP (NCI)Hs.688380
Alternative Splicing GalleryENSG00000188162
Gene ExpressionOTOG [ NCBI-GEO ]   OTOG [ EBI - ARRAY_EXPRESS ]   OTOG [ SEEK ]   OTOG [ MEM ]
Gene Expression Viewer (FireBrowse)OTOG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340990
GTEX Portal (Tissue expression)OTOG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRI0
Splice isoforms : SwissVarQ6ZRI0
PhosPhoSitePlusQ6ZRI0
Domaine pattern : Prosite (Expaxy)CTCK_2 (PS01225)    EGF_3 (PS50026)    VWFD (PS51233)   
Domains : Interpro (EBI)AbfB_ABD    Cys_knot_C    EGF-like_dom    Otogelin    TIL_dom    Unchr_dom_Cys-rich    VWF_dom    VWF_type-D   
Domain families : Pfam (Sanger)AbfB (PF05270)    C8 (PF08742)    TIL (PF01826)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam05270    pfam08742    pfam01826    pfam00094   
Domain families : Smart (EMBL)C8 (SM00832)  CT (SM00041)  VWC_out (SM00215)  VWD (SM00216)  
Conserved Domain (NCBI)OTOG
DMDM Disease mutations340990
Blocks (Seattle)OTOG
SuperfamilyQ6ZRI0
Human Protein AtlasENSG00000188162
Peptide AtlasQ6ZRI0
IPIIPI00418765   IPI00853292   IPI00887831   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRI0
IntAct (EBI)Q6ZRI0
FunCoupENSG00000188162
BioGRIDOTOG
STRING (EMBL)OTOG
ZODIACOTOG
Ontologies - Pathways
QuickGOQ6ZRI0
Ontology : AmiGOstructural molecule activity  extracellular space  sensory perception of sound  adult locomotory behavior  apical plasma membrane  L-arabinose metabolic process  alpha-L-arabinofuranosidase activity  
Ontology : EGO-EBIstructural molecule activity  extracellular space  sensory perception of sound  adult locomotory behavior  apical plasma membrane  L-arabinose metabolic process  alpha-L-arabinofuranosidase activity  
NDEx NetworkOTOG
Atlas of Cancer Signalling NetworkOTOG
Wikipedia pathwaysOTOG
Orthology - Evolution
OrthoDB340990
GeneTree (enSembl)ENSG00000188162
Phylogenetic Trees/Animal Genes : TreeFamOTOG
HOVERGENQ6ZRI0
HOGENOMQ6ZRI0
Homologs : HomoloGeneOTOG
Homology/Alignments : Family Browser (UCSC)OTOG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTOG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTOG
dbVarOTOG
ClinVarOTOG
1000_GenomesOTOG 
Exome Variant ServerOTOG
ExAC (Exome Aggregation Consortium)OTOG (select the gene name)
Genetic variants : HAPMAP340990
Genomic Variants (DGV)OTOG [DGVbeta]
DECIPHEROTOG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTOG 
Mutations
ICGC Data PortalOTOG 
TCGA Data PortalOTOG 
Broad Tumor PortalOTOG
OASIS PortalOTOG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTOG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTOG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTOG
DgiDB (Drug Gene Interaction Database)OTOG
DoCM (Curated mutations)OTOG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTOG (select a term)
intoGenOTOG
Cancer3DOTOG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604487    614945   
Orphanet12047   
MedgenOTOG
Genetic Testing Registry OTOG
NextProtQ6ZRI0 [Medical]
TSGene340990
GENETestsOTOG
Target ValidationOTOG
Huge Navigator OTOG [HugePedia]
snp3D : Map Gene to Disease340990
BioCentury BCIQOTOG
ClinGenOTOG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340990
Chemical/Pharm GKB GenePA32842
Clinical trialOTOG
Miscellaneous
canSAR (ICR)OTOG (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOG
EVEXOTOG
GoPubMedOTOG
iHOPOTOG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:35:15 CEST 2017

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