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OTOGL (otogelin like)

Identity

Alias_namesC12orf64
chromosome 12 open reading frame 64
otogelin-like
Alias_symbol (synonym)FLJ90579
Other aliasDFNB84B
HGNC (Hugo) OTOGL
LocusID (NCBI) 283310
Atlas_Id 71575
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 80209453 and ends at 80379090 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTOGL   26901
Cards
Entrez_Gene (NCBI)OTOGL  283310  otogelin like
AliasesC12orf64; DFNB84B
GeneCards (Weizmann)OTOGL
Ensembl hg19 (Hinxton)ENSG00000165899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165899 [Gene_View]  chr12:80209453-80379090 [Contig_View]  OTOGL [Vega]
ICGC DataPortalENSG00000165899
TCGA cBioPortalOTOGL
AceView (NCBI)OTOGL
Genatlas (Paris)OTOGL
WikiGenes283310
SOURCE (Princeton)OTOGL
Genetics Home Reference (NIH)OTOGL
Genomic and cartography
GoldenPath hg38 (UCSC)OTOGL  -     chr12:80209453-80379090 +  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTOGL  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblOTOGL - 12q21.31 [CytoView hg19]  OTOGL - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBIOTOGL [Mapview hg19]  OTOGL [Mapview hg38]
OMIM614925   614944   
Gene and transcription
Genbank (Entrez)AK075060 AK096852 BC101016 BC101017 BC101018
RefSeq transcript (Entrez)NM_173591
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTOGL
Cluster EST : UnigeneHs.723594 [ NCBI ]
CGAP (NCI)Hs.723594
Alternative Splicing GalleryENSG00000165899
Gene ExpressionOTOGL [ NCBI-GEO ]   OTOGL [ EBI - ARRAY_EXPRESS ]   OTOGL [ SEEK ]   OTOGL [ MEM ]
Gene Expression Viewer (FireBrowse)OTOGL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283310
GTEX Portal (Tissue expression)OTOGL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCN5
Splice isoforms : SwissVarQ3ZCN5
PhosPhoSitePlusQ3ZCN5
Domaine pattern : Prosite (Expaxy)CTCK_2 (PS01225)    VWFD (PS51233)   
Domains : Interpro (EBI)AbfB_ABD    Cys_knot_C    Otogl    TIL_dom    Unchr_dom_Cys-rich    VWF_dom    VWF_type-D   
Domain families : Pfam (Sanger)AbfB (PF05270)    C8 (PF08742)    TIL (PF01826)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam05270    pfam08742    pfam01826    pfam00094   
Domain families : Smart (EMBL)C8 (SM00832)  CT (SM00041)  VWC_out (SM00215)  VWD (SM00216)  
Conserved Domain (NCBI)OTOGL
DMDM Disease mutations283310
Blocks (Seattle)OTOGL
SuperfamilyQ3ZCN5
Human Protein AtlasENSG00000165899
Peptide AtlasQ3ZCN5
HPRD08815
IPIIPI01018015   IPI01021306   IPI01020987   IPI01021608   IPI01021793   IPI00878688   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCN5
IntAct (EBI)Q3ZCN5
FunCoupENSG00000165899
BioGRIDOTOGL
STRING (EMBL)OTOGL
ZODIACOTOGL
Ontologies - Pathways
QuickGOQ3ZCN5
Ontology : AmiGOextracellular region  sensory perception of sound  L-arabinose metabolic process  alpha-L-arabinofuranosidase activity  
Ontology : EGO-EBIextracellular region  sensory perception of sound  L-arabinose metabolic process  alpha-L-arabinofuranosidase activity  
NDEx NetworkOTOGL
Atlas of Cancer Signalling NetworkOTOGL
Wikipedia pathwaysOTOGL
Orthology - Evolution
OrthoDB283310
GeneTree (enSembl)ENSG00000165899
Phylogenetic Trees/Animal Genes : TreeFamOTOGL
HOVERGENQ3ZCN5
HOGENOMQ3ZCN5
Homologs : HomoloGeneOTOGL
Homology/Alignments : Family Browser (UCSC)OTOGL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTOGL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTOGL
dbVarOTOGL
ClinVarOTOGL
1000_GenomesOTOGL 
Exome Variant ServerOTOGL
ExAC (Exome Aggregation Consortium)OTOGL (select the gene name)
Genetic variants : HAPMAP283310
Genomic Variants (DGV)OTOGL [DGVbeta]
DECIPHEROTOGL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTOGL 
Mutations
ICGC Data PortalOTOGL 
TCGA Data PortalOTOGL 
Broad Tumor PortalOTOGL
OASIS PortalOTOGL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTOGL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTOGL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTOGL
DgiDB (Drug Gene Interaction Database)OTOGL
DoCM (Curated mutations)OTOGL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTOGL (select a term)
intoGenOTOGL
Cancer3DOTOGL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614925    614944   
Orphanet12047   
MedgenOTOGL
Genetic Testing Registry OTOGL
NextProtQ3ZCN5 [Medical]
TSGene283310
GENETestsOTOGL
Target ValidationOTOGL
Huge Navigator OTOGL [HugePedia]
snp3D : Map Gene to Disease283310
BioCentury BCIQOTOGL
ClinGenOTOGL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283310
Chemical/Pharm GKB GenePA162377849
Clinical trialOTOGL
Miscellaneous
canSAR (ICR)OTOGL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOGL
EVEXOTOGL
GoPubMedOTOGL
iHOPOTOGL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:35:15 CEST 2017

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