Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OTOP2 (otopetrin 2)

Identity

Other alias-
HGNC (Hugo) OTOP2
LocusID (NCBI) 92736
Atlas_Id 71577
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74924275 and ends at 74933911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITGB4 (17q25.1) / OTOP2 (17q25.1)SLC16A5 (17q25.1) / OTOP2 (17q25.1)SLC16A5 OTOP2
ITGB4 OTOP2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTOP2   19657
Cards
Entrez_Gene (NCBI)OTOP2  92736  otopetrin 2
Aliases
GeneCards (Weizmann)OTOP2
Ensembl hg19 (Hinxton)ENSG00000183034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183034 [Gene_View]  chr17:74924275-74933911 [Contig_View]  OTOP2 [Vega]
ICGC DataPortalENSG00000183034
TCGA cBioPortalOTOP2
AceView (NCBI)OTOP2
Genatlas (Paris)OTOP2
WikiGenes92736
SOURCE (Princeton)OTOP2
Genetics Home Reference (NIH)OTOP2
Genomic and cartography
GoldenPath hg38 (UCSC)OTOP2  -     chr17:74924275-74933911 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTOP2  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblOTOP2 - 17q25.1 [CytoView hg19]  OTOP2 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIOTOP2 [Mapview hg19]  OTOP2 [Mapview hg38]
OMIM607827   
Gene and transcription
Genbank (Entrez)AK000063 BC148346 BC152986 BK000567
RefSeq transcript (Entrez)NM_178160
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTOP2
Cluster EST : UnigeneHs.352515 [ NCBI ]
CGAP (NCI)Hs.352515
Alternative Splicing GalleryENSG00000183034
Gene ExpressionOTOP2 [ NCBI-GEO ]   OTOP2 [ EBI - ARRAY_EXPRESS ]   OTOP2 [ SEEK ]   OTOP2 [ MEM ]
Gene Expression Viewer (FireBrowse)OTOP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92736
GTEX Portal (Tissue expression)OTOP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTS6
Splice isoforms : SwissVarQ7RTS6
PhosPhoSitePlusQ7RTS6
Domains : Interpro (EBI)Otopetrin   
Domain families : Pfam (Sanger)Otopetrin (PF03189)   
Domain families : Pfam (NCBI)pfam03189   
Conserved Domain (NCBI)OTOP2
DMDM Disease mutations92736
Blocks (Seattle)OTOP2
SuperfamilyQ7RTS6
Human Protein AtlasENSG00000183034
Peptide AtlasQ7RTS6
HPRD07614
IPIIPI00255821   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTS6
IntAct (EBI)Q7RTS6
FunCoupENSG00000183034
BioGRIDOTOP2
STRING (EMBL)OTOP2
ZODIACOTOP2
Ontologies - Pathways
QuickGOQ7RTS6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkOTOP2
Atlas of Cancer Signalling NetworkOTOP2
Wikipedia pathwaysOTOP2
Orthology - Evolution
OrthoDB92736
GeneTree (enSembl)ENSG00000183034
Phylogenetic Trees/Animal Genes : TreeFamOTOP2
HOVERGENQ7RTS6
HOGENOMQ7RTS6
Homologs : HomoloGeneOTOP2
Homology/Alignments : Family Browser (UCSC)OTOP2
Gene fusions - Rearrangements
Fusion: TCGASLC16A5 OTOP2
Fusion: TCGAITGB4 OTOP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTOP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTOP2
dbVarOTOP2
ClinVarOTOP2
1000_GenomesOTOP2 
Exome Variant ServerOTOP2
ExAC (Exome Aggregation Consortium)OTOP2 (select the gene name)
Genetic variants : HAPMAP92736
Genomic Variants (DGV)OTOP2 [DGVbeta]
DECIPHEROTOP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTOP2 
Mutations
ICGC Data PortalOTOP2 
TCGA Data PortalOTOP2 
Broad Tumor PortalOTOP2
OASIS PortalOTOP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTOP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTOP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTOP2
DgiDB (Drug Gene Interaction Database)OTOP2
DoCM (Curated mutations)OTOP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTOP2 (select a term)
intoGenOTOP2
Cancer3DOTOP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607827   
Orphanet
MedgenOTOP2
Genetic Testing Registry OTOP2
NextProtQ7RTS6 [Medical]
TSGene92736
GENETestsOTOP2
Target ValidationOTOP2
Huge Navigator OTOP2 [HugePedia]
snp3D : Map Gene to Disease92736
BioCentury BCIQOTOP2
ClinGenOTOP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92736
Chemical/Pharm GKB GenePA134930692
Clinical trialOTOP2
Miscellaneous
canSAR (ICR)OTOP2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOP2
EVEXOTOP2
GoPubMedOTOP2
iHOPOTOP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:33:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.