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OTOP3 (otopetrin 3)

Identity

Other alias-
HGNC (Hugo) OTOP3
LocusID (NCBI) 347741
Atlas_Id 71578
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74935802 and ends at 74949992 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLTC (17q23.1) / OTOP3 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTOP3   19658
Cards
Entrez_Gene (NCBI)OTOP3  347741  otopetrin 3
Aliases
GeneCards (Weizmann)OTOP3
Ensembl hg19 (Hinxton)ENSG00000182938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182938 [Gene_View]  chr17:74935802-74949992 [Contig_View]  OTOP3 [Vega]
ICGC DataPortalENSG00000182938
TCGA cBioPortalOTOP3
AceView (NCBI)OTOP3
Genatlas (Paris)OTOP3
WikiGenes347741
SOURCE (Princeton)OTOP3
Genetics Home Reference (NIH)OTOP3
Genomic and cartography
GoldenPath hg38 (UCSC)OTOP3  -     chr17:74935802-74949992 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTOP3  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblOTOP3 - 17q25.1 [CytoView hg19]  OTOP3 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIOTOP3 [Mapview hg19]  OTOP3 [Mapview hg38]
OMIM607828   
Gene and transcription
Genbank (Entrez)AB593153 BC140366 BC143799 BK000568
RefSeq transcript (Entrez)NM_001272005 NM_178233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTOP3
Cluster EST : UnigeneHs.454407 [ NCBI ]
CGAP (NCI)Hs.454407
Alternative Splicing GalleryENSG00000182938
Gene ExpressionOTOP3 [ NCBI-GEO ]   OTOP3 [ EBI - ARRAY_EXPRESS ]   OTOP3 [ SEEK ]   OTOP3 [ MEM ]
Gene Expression Viewer (FireBrowse)OTOP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347741
GTEX Portal (Tissue expression)OTOP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTS5
Splice isoforms : SwissVarQ7RTS5
PhosPhoSitePlusQ7RTS5
Domains : Interpro (EBI)Otopetrin    Znf_C2H2   
Domain families : Pfam (Sanger)Otopetrin (PF03189)   
Domain families : Pfam (NCBI)pfam03189   
Conserved Domain (NCBI)OTOP3
DMDM Disease mutations347741
Blocks (Seattle)OTOP3
SuperfamilyQ7RTS5
Human Protein AtlasENSG00000182938
Peptide AtlasQ7RTS5
HPRD09700
IPIIPI00332628   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTS5
IntAct (EBI)Q7RTS5
FunCoupENSG00000182938
BioGRIDOTOP3
STRING (EMBL)OTOP3
ZODIACOTOP3
Ontologies - Pathways
QuickGOQ7RTS5
Ontology : AmiGOnucleic acid binding  integral component of membrane  
Ontology : EGO-EBInucleic acid binding  integral component of membrane  
NDEx NetworkOTOP3
Atlas of Cancer Signalling NetworkOTOP3
Wikipedia pathwaysOTOP3
Orthology - Evolution
OrthoDB347741
GeneTree (enSembl)ENSG00000182938
Phylogenetic Trees/Animal Genes : TreeFamOTOP3
HOVERGENQ7RTS5
HOGENOMQ7RTS5
Homologs : HomoloGeneOTOP3
Homology/Alignments : Family Browser (UCSC)OTOP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTOP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTOP3
dbVarOTOP3
ClinVarOTOP3
1000_GenomesOTOP3 
Exome Variant ServerOTOP3
ExAC (Exome Aggregation Consortium)OTOP3 (select the gene name)
Genetic variants : HAPMAP347741
Genomic Variants (DGV)OTOP3 [DGVbeta]
DECIPHEROTOP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTOP3 
Mutations
ICGC Data PortalOTOP3 
TCGA Data PortalOTOP3 
Broad Tumor PortalOTOP3
OASIS PortalOTOP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTOP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTOP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTOP3
DgiDB (Drug Gene Interaction Database)OTOP3
DoCM (Curated mutations)OTOP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTOP3 (select a term)
intoGenOTOP3
Cancer3DOTOP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607828   
Orphanet
MedgenOTOP3
Genetic Testing Registry OTOP3
NextProtQ7RTS5 [Medical]
TSGene347741
GENETestsOTOP3
Target ValidationOTOP3
Huge Navigator OTOP3 [HugePedia]
snp3D : Map Gene to Disease347741
BioCentury BCIQOTOP3
ClinGenOTOP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347741
Chemical/Pharm GKB GenePA134888566
Clinical trialOTOP3
Miscellaneous
canSAR (ICR)OTOP3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOP3
EVEXOTOP3
GoPubMedOTOP3
iHOPOTOP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:16 CEST 2017

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