Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OTOR (otoraplin)

Identity

Alias_symbol (synonym)MIAL
MIAL1
FDP
Other alias
HGNC (Hugo) OTOR
LocusID (NCBI) 56914
Atlas_Id 41618
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 16748353 and ends at 16752164 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTOR   8517
Cards
Entrez_Gene (NCBI)OTOR  56914  otoraplin
AliasesFDP; MIAL1
GeneCards (Weizmann)OTOR
Ensembl hg19 (Hinxton)ENSG00000125879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125879 [Gene_View]  chr20:16748353-16752164 [Contig_View]  OTOR [Vega]
ICGC DataPortalENSG00000125879
TCGA cBioPortalOTOR
AceView (NCBI)OTOR
Genatlas (Paris)OTOR
WikiGenes56914
SOURCE (Princeton)OTOR
Genetics Home Reference (NIH)OTOR
Genomic and cartography
GoldenPath hg38 (UCSC)OTOR  -     chr20:16748353-16752164 +  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTOR  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblOTOR - 20p12.1 [CytoView hg19]  OTOR - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIOTOR [Mapview hg19]  OTOR [Mapview hg38]
OMIM606067   
Gene and transcription
Genbank (Entrez)AF233261 AF243505 AJ242552 AY359082 BC101688
RefSeq transcript (Entrez)NM_020157
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTOR
Cluster EST : UnigeneHs.41119 [ NCBI ]
CGAP (NCI)Hs.41119
Alternative Splicing GalleryENSG00000125879
Gene ExpressionOTOR [ NCBI-GEO ]   OTOR [ EBI - ARRAY_EXPRESS ]   OTOR [ SEEK ]   OTOR [ MEM ]
Gene Expression Viewer (FireBrowse)OTOR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56914
GTEX Portal (Tissue expression)OTOR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRC9
Splice isoforms : SwissVarQ9NRC9
PhosPhoSitePlusQ9NRC9
Domains : Interpro (EBI)SH3_2    SH3_domain   
Domain families : Pfam (Sanger)SH3_2 (PF07653)   
Domain families : Pfam (NCBI)pfam07653   
Domain families : Smart (EMBL)SH3 (SM00326)  
Conserved Domain (NCBI)OTOR
DMDM Disease mutations56914
Blocks (Seattle)OTOR
SuperfamilyQ9NRC9
Human Protein AtlasENSG00000125879
Peptide AtlasQ9NRC9
HPRD07300
IPIIPI00016333   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRC9
IntAct (EBI)Q9NRC9
FunCoupENSG00000125879
BioGRIDOTOR
STRING (EMBL)OTOR
ZODIACOTOR
Ontologies - Pathways
QuickGOQ9NRC9
Ontology : AmiGOcartilage condensation  extracellular region  sensory perception of sound  
Ontology : EGO-EBIcartilage condensation  extracellular region  sensory perception of sound  
NDEx NetworkOTOR
Atlas of Cancer Signalling NetworkOTOR
Wikipedia pathwaysOTOR
Orthology - Evolution
OrthoDB56914
GeneTree (enSembl)ENSG00000125879
Phylogenetic Trees/Animal Genes : TreeFamOTOR
HOVERGENQ9NRC9
HOGENOMQ9NRC9
Homologs : HomoloGeneOTOR
Homology/Alignments : Family Browser (UCSC)OTOR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTOR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTOR
dbVarOTOR
ClinVarOTOR
1000_GenomesOTOR 
Exome Variant ServerOTOR
ExAC (Exome Aggregation Consortium)OTOR (select the gene name)
Genetic variants : HAPMAP56914
Genomic Variants (DGV)OTOR [DGVbeta]
DECIPHEROTOR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTOR 
Mutations
ICGC Data PortalOTOR 
TCGA Data PortalOTOR 
Broad Tumor PortalOTOR
OASIS PortalOTOR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTOR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTOR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTOR
DgiDB (Drug Gene Interaction Database)OTOR
DoCM (Curated mutations)OTOR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTOR (select a term)
intoGenOTOR
Cancer3DOTOR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606067   
Orphanet
MedgenOTOR
Genetic Testing Registry OTOR
NextProtQ9NRC9 [Medical]
TSGene56914
GENETestsOTOR
Target ValidationOTOR
Huge Navigator OTOR [HugePedia]
snp3D : Map Gene to Disease56914
BioCentury BCIQOTOR
ClinGenOTOR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56914
Chemical/Pharm GKB GenePA32843
Clinical trialOTOR
Miscellaneous
canSAR (ICR)OTOR (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOR
EVEXOTOR
GoPubMedOTOR
iHOPOTOR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:23:22 CEST 2017

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