Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OTOS (otospiralin)

Identity

Alias_symbol (synonym)OTOSP
Other alias
HGNC (Hugo) OTOS
LocusID (NCBI) 150677
Atlas_Id 71579
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 241078446 and ends at 241080073 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTOS   22644
Cards
Entrez_Gene (NCBI)OTOS  150677  otospiralin
AliasesOTOSP
GeneCards (Weizmann)OTOS
Ensembl hg19 (Hinxton)ENSG00000178602 [Gene_View]  chr2:241078446-241080073 [Contig_View]  OTOS [Vega]
Ensembl hg38 (Hinxton)ENSG00000178602 [Gene_View]  chr2:241078446-241080073 [Contig_View]  OTOS [Vega]
ICGC DataPortalENSG00000178602
TCGA cBioPortalOTOS
AceView (NCBI)OTOS
Genatlas (Paris)OTOS
WikiGenes150677
SOURCE (Princeton)OTOS
Genetics Home Reference (NIH)OTOS
Genomic and cartography
GoldenPath hg19 (UCSC)OTOS  -     chr2:241078446-241080073 -  2q37.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OTOS  -     2q37.3   [Description]    (hg38-Dec_2013)
EnsemblOTOS - 2q37.3 [CytoView hg19]  OTOS - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIOTOS [Mapview hg19]  OTOS [Mapview hg38]
OMIM607877   
Gene and transcription
Genbank (Entrez)AI201810 BC105085 BC105087 BX118794
RefSeq transcript (Entrez)NM_148961
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929308
Consensus coding sequences : CCDS (NCBI)OTOS
Cluster EST : UnigeneHs.148586 [ NCBI ]
CGAP (NCI)Hs.148586
Alternative Splicing GalleryENSG00000178602
Gene ExpressionOTOS [ NCBI-GEO ]   OTOS [ EBI - ARRAY_EXPRESS ]   OTOS [ SEEK ]   OTOS [ MEM ]
Gene Expression Viewer (FireBrowse)OTOS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150677
GTEX Portal (Tissue expression)OTOS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHW6
Splice isoforms : SwissVarQ8NHW6
PhosPhoSitePlusQ8NHW6
Domains : Interpro (EBI)Otospiralin   
Domain families : Pfam (Sanger)OTOS (PF15182)   
Domain families : Pfam (NCBI)pfam15182   
Domain structure : Prodom (Prabi Lyon)PD684821 (PD684821)   
Conserved Domain (NCBI)OTOS
DMDM Disease mutations150677
Blocks (Seattle)OTOS
SuperfamilyQ8NHW6
Human Protein AtlasENSG00000178602
Peptide AtlasQ8NHW6
HPRD09714
IPIIPI00879533   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHW6
IntAct (EBI)Q8NHW6
FunCoupENSG00000178602
BioGRIDOTOS
STRING (EMBL)OTOS
ZODIACOTOS
Ontologies - Pathways
QuickGOQ8NHW6
Ontology : AmiGOextracellular region  sensory perception of sound  
Ontology : EGO-EBIextracellular region  sensory perception of sound  
NDEx NetworkOTOS
Atlas of Cancer Signalling NetworkOTOS
Wikipedia pathwaysOTOS
Orthology - Evolution
OrthoDB150677
GeneTree (enSembl)ENSG00000178602
Phylogenetic Trees/Animal Genes : TreeFamOTOS
HOVERGENQ8NHW6
HOGENOMQ8NHW6
Homologs : HomoloGeneOTOS
Homology/Alignments : Family Browser (UCSC)OTOS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTOS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTOS
dbVarOTOS
ClinVarOTOS
1000_GenomesOTOS 
Exome Variant ServerOTOS
ExAC (Exome Aggregation Consortium)OTOS (select the gene name)
Genetic variants : HAPMAP150677
Genomic Variants (DGV)OTOS [DGVbeta]
DECIPHER (Syndromes)2:241078446-241080073  ENSG00000178602
CONAN: Copy Number AnalysisOTOS 
Mutations
ICGC Data PortalOTOS 
TCGA Data PortalOTOS 
Broad Tumor PortalOTOS
OASIS PortalOTOS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTOS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTOS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTOS
DgiDB (Drug Gene Interaction Database)OTOS
DoCM (Curated mutations)OTOS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTOS (select a term)
intoGenOTOS
Cancer3DOTOS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607877   
Orphanet
MedgenOTOS
Genetic Testing Registry OTOS
NextProtQ8NHW6 [Medical]
TSGene150677
GENETestsOTOS
Huge Navigator OTOS [HugePedia]
snp3D : Map Gene to Disease150677
BioCentury BCIQOTOS
ClinGenOTOS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150677
Chemical/Pharm GKB GenePA134906408
Clinical trialOTOS
Miscellaneous
canSAR (ICR)OTOS (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOS
EVEXOTOS
GoPubMedOTOS
iHOPOTOS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:37:31 CET 2017

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