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OTP (orthopedia homeobox)

Identity

Alias_namesorthopedia homolog (Drosophila)
Other alias-
HGNC (Hugo) OTP
LocusID (NCBI) 23440
Atlas_Id 52842
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 77628712 and ends at 77638697 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
OTP (5q14.1) / PACRG (6q26)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTP   8518
Cards
Entrez_Gene (NCBI)OTP  23440  orthopedia homeobox
Aliases
GeneCards (Weizmann)OTP
Ensembl hg19 (Hinxton)ENSG00000171540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171540 [Gene_View]  chr5:77628712-77638697 [Contig_View]  OTP [Vega]
ICGC DataPortalENSG00000171540
TCGA cBioPortalOTP
AceView (NCBI)OTP
Genatlas (Paris)OTP
WikiGenes23440
SOURCE (Princeton)OTP
Genetics Home Reference (NIH)OTP
Genomic and cartography
GoldenPath hg38 (UCSC)OTP  -     chr5:77628712-77638697 -  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTP  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblOTP - 5q14.1 [CytoView hg19]  OTP - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIOTP [Mapview hg19]  OTP [Mapview hg38]
OMIM604529   
Gene and transcription
Genbank (Entrez)BC001800 EU446696
RefSeq transcript (Entrez)NM_032109
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTP
Cluster EST : UnigeneHs.202247 [ NCBI ]
CGAP (NCI)Hs.202247
Alternative Splicing GalleryENSG00000171540
Gene ExpressionOTP [ NCBI-GEO ]   OTP [ EBI - ARRAY_EXPRESS ]   OTP [ SEEK ]   OTP [ MEM ]
Gene Expression Viewer (FireBrowse)OTP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23440
GTEX Portal (Tissue expression)OTP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XKR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XKR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XKR4
Splice isoforms : SwissVarQ5XKR4
PhosPhoSitePlusQ5XKR4
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    OAR (PS50803)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    HTH_motif    OAR_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)    OAR (PF03826)   
Domain families : Pfam (NCBI)pfam00046    pfam03826   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)OTP
DMDM Disease mutations23440
Blocks (Seattle)OTP
SuperfamilyQ5XKR4
Human Protein AtlasENSG00000171540
Peptide AtlasQ5XKR4
HPRD05166
IPIIPI00029796   
Protein Interaction databases
DIP (DOE-UCLA)Q5XKR4
IntAct (EBI)Q5XKR4
FunCoupENSG00000171540
BioGRIDOTP
STRING (EMBL)OTP
ZODIACOTP
Ontologies - Pathways
QuickGOQ5XKR4
Ontology : AmiGOpositive regulation of neuroblast proliferation  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  forebrain neuron differentiation  hypothalamus cell differentiation  neurohypophysis development  sequence-specific DNA binding  
Ontology : EGO-EBIpositive regulation of neuroblast proliferation  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  forebrain neuron differentiation  hypothalamus cell differentiation  neurohypophysis development  sequence-specific DNA binding  
NDEx NetworkOTP
Atlas of Cancer Signalling NetworkOTP
Wikipedia pathwaysOTP
Orthology - Evolution
OrthoDB23440
GeneTree (enSembl)ENSG00000171540
Phylogenetic Trees/Animal Genes : TreeFamOTP
HOVERGENQ5XKR4
HOGENOMQ5XKR4
Homologs : HomoloGeneOTP
Homology/Alignments : Family Browser (UCSC)OTP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTP
dbVarOTP
ClinVarOTP
1000_GenomesOTP 
Exome Variant ServerOTP
ExAC (Exome Aggregation Consortium)OTP (select the gene name)
Genetic variants : HAPMAP23440
Genomic Variants (DGV)OTP [DGVbeta]
DECIPHEROTP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTP 
Mutations
ICGC Data PortalOTP 
TCGA Data PortalOTP 
Broad Tumor PortalOTP
OASIS PortalOTP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTP
DgiDB (Drug Gene Interaction Database)OTP
DoCM (Curated mutations)OTP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTP (select a term)
intoGenOTP
Cancer3DOTP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604529   
Orphanet
MedgenOTP
Genetic Testing Registry OTP
NextProtQ5XKR4 [Medical]
TSGene23440
GENETestsOTP
Target ValidationOTP
Huge Navigator OTP [HugePedia]
snp3D : Map Gene to Disease23440
BioCentury BCIQOTP
ClinGenOTP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23440
Chemical/Pharm GKB GenePA32844
Clinical trialOTP
Miscellaneous
canSAR (ICR)OTP (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTP
EVEXOTP
GoPubMedOTP
iHOPOTP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:09:50 CEST 2017

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