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OTUD1 (OTU deubiquitinase 1)

Identity

Alias_namesOTDC1
OTU domain containing 1
Alias_symbol (synonym)DUBA7
Other alias
HGNC (Hugo) OTUD1
LocusID (NCBI) 220213
Atlas_Id 54907
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 23439269 and ends at 23442381 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTUD1   27346
Cards
Entrez_Gene (NCBI)OTUD1  220213  OTU deubiquitinase 1
AliasesDUBA7; OTDC1
GeneCards (Weizmann)OTUD1
Ensembl hg19 (Hinxton)ENSG00000165312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165312 [Gene_View]  chr10:23439269-23442381 [Contig_View]  OTUD1 [Vega]
ICGC DataPortalENSG00000165312
TCGA cBioPortalOTUD1
AceView (NCBI)OTUD1
Genatlas (Paris)OTUD1
WikiGenes220213
SOURCE (Princeton)OTUD1
Genetics Home Reference (NIH)OTUD1
Genomic and cartography
GoldenPath hg38 (UCSC)OTUD1  -     chr10:23439269-23442381 +  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTUD1  -     10p12.2   [Description]    (hg19-Feb_2009)
EnsemblOTUD1 - 10p12.2 [CytoView hg19]  OTUD1 - 10p12.2 [CytoView hg38]
Mapping of homologs : NCBIOTUD1 [Mapview hg19]  OTUD1 [Mapview hg38]
OMIM612022   
Gene and transcription
Genbank (Entrez)AB188491 AI261652 AK096389
RefSeq transcript (Entrez)NM_001145373
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTUD1
Cluster EST : UnigeneHs.499042 [ NCBI ]
CGAP (NCI)Hs.499042
Alternative Splicing GalleryENSG00000165312
Gene ExpressionOTUD1 [ NCBI-GEO ]   OTUD1 [ EBI - ARRAY_EXPRESS ]   OTUD1 [ SEEK ]   OTUD1 [ MEM ]
Gene Expression Viewer (FireBrowse)OTUD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220213
GTEX Portal (Tissue expression)OTUD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV17
Splice isoforms : SwissVarQ5VV17
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ5VV17
Domaine pattern : Prosite (Expaxy)OTU (PS50802)   
Domains : Interpro (EBI)OTU_dom   
Domain families : Pfam (Sanger)OTU (PF02338)   
Domain families : Pfam (NCBI)pfam02338   
Conserved Domain (NCBI)OTUD1
DMDM Disease mutations220213
Blocks (Seattle)OTUD1
PDB (SRS)4BOP   
PDB (PDBSum)4BOP   
PDB (IMB)4BOP   
PDB (RSDB)4BOP   
Structural Biology KnowledgeBase4BOP   
SCOP (Structural Classification of Proteins)4BOP   
CATH (Classification of proteins structures)4BOP   
SuperfamilyQ5VV17
Human Protein AtlasENSG00000165312
Peptide AtlasQ5VV17
IPIIPI00174955   
Protein Interaction databases
DIP (DOE-UCLA)Q5VV17
IntAct (EBI)Q5VV17
FunCoupENSG00000165312
BioGRIDOTUD1
STRING (EMBL)OTUD1
ZODIACOTUD1
Ontologies - Pathways
QuickGOQ5VV17
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  protein K63-linked deubiquitination  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  protein K63-linked deubiquitination  
NDEx NetworkOTUD1
Atlas of Cancer Signalling NetworkOTUD1
Wikipedia pathwaysOTUD1
Orthology - Evolution
OrthoDB220213
GeneTree (enSembl)ENSG00000165312
Phylogenetic Trees/Animal Genes : TreeFamOTUD1
HOVERGENQ5VV17
HOGENOMQ5VV17
Homologs : HomoloGeneOTUD1
Homology/Alignments : Family Browser (UCSC)OTUD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTUD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTUD1
dbVarOTUD1
ClinVarOTUD1
1000_GenomesOTUD1 
Exome Variant ServerOTUD1
ExAC (Exome Aggregation Consortium)OTUD1 (select the gene name)
Genetic variants : HAPMAP220213
Genomic Variants (DGV)OTUD1 [DGVbeta]
DECIPHEROTUD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTUD1 
Mutations
ICGC Data PortalOTUD1 
TCGA Data PortalOTUD1 
Broad Tumor PortalOTUD1
OASIS PortalOTUD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTUD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTUD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTUD1
DgiDB (Drug Gene Interaction Database)OTUD1
DoCM (Curated mutations)OTUD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTUD1 (select a term)
intoGenOTUD1
Cancer3DOTUD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612022   
Orphanet
MedgenOTUD1
Genetic Testing Registry OTUD1
NextProtQ5VV17 [Medical]
TSGene220213
GENETestsOTUD1
Target ValidationOTUD1
Huge Navigator OTUD1 [HugePedia]
snp3D : Map Gene to Disease220213
BioCentury BCIQOTUD1
ClinGenOTUD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220213
Chemical/Pharm GKB GenePA134932304
Clinical trialOTUD1
Miscellaneous
canSAR (ICR)OTUD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTUD1
EVEXOTUD1
GoPubMedOTUD1
iHOPOTUD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:09 CEST 2017

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