Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OTUD1 (OTU deubiquitinase 1)

Identity

Alias (NCBI)DUBA7
OTDC1
HGNC (Hugo) OTUD1
HGNC Alias symbDUBA7
HGNC Previous nameOTDC1
HGNC Previous nameOTU domain containing 1
LocusID (NCBI) 220213
Atlas_Id 54907
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 23439269 and ends at 23442381 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OTUD1   27346
Cards
Entrez_Gene (NCBI)OTUD1    OTU deubiquitinase 1
AliasesDUBA7; OTDC1
GeneCards (Weizmann)OTUD1
Ensembl hg19 (Hinxton)ENSG00000165312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165312 [Gene_View]  ENSG00000165312 [Sequence]  chr10:23439269-23442381 [Contig_View]  OTUD1 [Vega]
ICGC DataPortalENSG00000165312
TCGA cBioPortalOTUD1
AceView (NCBI)OTUD1
Genatlas (Paris)OTUD1
SOURCE (Princeton)OTUD1
Genetics Home Reference (NIH)OTUD1
Genomic and cartography
GoldenPath hg38 (UCSC)OTUD1  -     chr10:23439269-23442381 +  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTUD1  -     10p12.2   [Description]    (hg19-Feb_2009)
GoldenPathOTUD1 - 10p12.2 [CytoView hg19]  OTUD1 - 10p12.2 [CytoView hg38]
ImmunoBaseENSG00000165312
Genome Data Viewer NCBIOTUD1 [Mapview hg19]  
OMIM612022   
Gene and transcription
Genbank (Entrez)AB188491 AI261652 AK096389
RefSeq transcript (Entrez)NM_001145373
Consensus coding sequences : CCDS (NCBI)OTUD1
Gene ExpressionOTUD1 [ NCBI-GEO ]   OTUD1 [ EBI - ARRAY_EXPRESS ]   OTUD1 [ SEEK ]   OTUD1 [ MEM ]
Gene Expression Viewer (FireBrowse)OTUD1 [ Firebrowse - Broad ]
GenevisibleExpression of OTUD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220213
GTEX Portal (Tissue expression)OTUD1
Human Protein AtlasENSG00000165312-OTUD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV17
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5VV17
Domaine pattern : Prosite (Expaxy)OTU (PS50802)   
Domains : Interpro (EBI)OTU_dom    Papain-like_cys_pep_sf   
Domain families : Pfam (Sanger)OTU (PF02338)   
Domain families : Pfam (NCBI)pfam02338   
Conserved Domain (NCBI)OTUD1
PDB (RSDB)4BOP   
PDB Europe4BOP   
PDB (PDBSum)4BOP   
PDB (IMB)4BOP   
Structural Biology KnowledgeBase4BOP   
SCOP (Structural Classification of Proteins)4BOP   
CATH (Classification of proteins structures)4BOP   
SuperfamilyQ5VV17
AlphaFold pdb e-kbQ5VV17   
Human Protein Atlas [tissue]ENSG00000165312-OTUD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5VV17
IntAct (EBI)Q5VV17
BioGRIDOTUD1
STRING (EMBL)OTUD1
ZODIACOTUD1
Ontologies - Pathways
QuickGOQ5VV17
Ontology : AmiGOthiol-dependent deubiquitinase  thiol-dependent deubiquitinase  protein deubiquitination  protein K63-linked deubiquitination  protein K63-linked deubiquitination  
Ontology : EGO-EBIthiol-dependent deubiquitinase  thiol-dependent deubiquitinase  protein deubiquitination  protein K63-linked deubiquitination  protein K63-linked deubiquitination  
NDEx NetworkOTUD1
Atlas of Cancer Signalling NetworkOTUD1
Wikipedia pathwaysOTUD1
Orthology - Evolution
OrthoDB220213
GeneTree (enSembl)ENSG00000165312
Phylogenetic Trees/Animal Genes : TreeFamOTUD1
Homologs : HomoloGeneOTUD1
Homology/Alignments : Family Browser (UCSC)OTUD1
Gene fusions - Rearrangements
Fusion : QuiverOTUD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTUD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTUD1
dbVarOTUD1
ClinVarOTUD1
MonarchOTUD1
1000_GenomesOTUD1 
Exome Variant ServerOTUD1
GNOMAD BrowserENSG00000165312
Varsome BrowserOTUD1
ACMGOTUD1 variants
VarityQ5VV17
Genomic Variants (DGV)OTUD1 [DGVbeta]
DECIPHEROTUD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTUD1 
Mutations
ICGC Data PortalOTUD1 
TCGA Data PortalOTUD1 
Broad Tumor PortalOTUD1
OASIS PortalOTUD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTUD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOTUD1
Mutations and Diseases : HGMDOTUD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOTUD1
DgiDB (Drug Gene Interaction Database)OTUD1
DoCM (Curated mutations)OTUD1
CIViC (Clinical Interpretations of Variants in Cancer)OTUD1
Cancer3DOTUD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612022   
Orphanet
DisGeNETOTUD1
MedgenOTUD1
Genetic Testing Registry OTUD1
NextProtQ5VV17 [Medical]
GENETestsOTUD1
Target ValidationOTUD1
Huge Navigator OTUD1 [HugePedia]
ClinGenOTUD1
Clinical trials, drugs, therapy
MyCancerGenomeOTUD1
Protein Interactions : CTDOTUD1
Pharm GKB GenePA134932304
PharosQ5VV17
Clinical trialOTUD1
Miscellaneous
canSAR (ICR)OTUD1
HarmonizomeOTUD1
DataMed IndexOTUD1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOTUD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:23:58 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.